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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030995 through 18771 annotations produced 1 hits



(CG7914):

Annotation Number : CG7914
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030995
Gbrowse : chrX:19086533-19087481 (-) // 100.0 //
Probeset : 1623725_at
Accessions : protein= NP_573359;, nucleotide= NM_133131;
Interpro : 0016491 // oxidoreductase activity // inferred from electronic annotation
FlyMine data for FBgn0030995.
VDRC has 3 RNAi stocks for FBgn0030995 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain17 ± 03 of 4 0.60Down
Head20 ± 11 of 4 0.70Down
Eye21 ± 21 of 4 0.80None
Thoracicoabdominal ganglion15 ± 10 of 4 0.60Down
Salivary gland36 ± 20 of 4 1.31Up
Crop19 ± 30 of 4 0.70None
Midgut26 ± 22 of 4 1.00None
Tubule16 ± 31 of 4 0.60Down
Hindgut20 ± 10 of 4 0.80Down
Heart23 ± 31 of 4 0.85None
Fat body26 ± 30 of 4 0.96None
Ovary36 ± 34 of 4 1.30None
Testis23 ± 23 of 4 0.90None
Male accessory glands36 ± 34 of 4 1.30None
Virgin spermatheca14 ± 21 of 4 0.53Down
Mated spermatheca25 ± 20 of 4 0.92None
Adult carcass22 ± 20 of 4 0.80None
Larval CNS26 ± 34 of 4 0.96None
Larval Salivary gland27 ± 30 of 4 0.99None
Larval midgut18 ± 21 of 4 0.68Down
Larval tubule30 ± 14 of 4 1.10None
Larval hindgut19 ± 32 of 4 0.70None
Larval fat body21 ± 20 of 4 0.80None
Larval trachea35 ± 24 of 4 1.29Up
Larval carcass17 ± 21 of 4 0.65Down
S2 cells (growing)52 ± 34 of 4 1.91Up
Whole fly27 ± 13 of 4

Looking for FBgn0030995. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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