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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0030996 through 18771 annotations produced 1 hits


Annotation Number : CG14194
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030996
Gbrowse : chrX:19087599-19090076 (+) // 99.79 //
Probeset : 1625781_at
Accessions : protein= NP_573360;, nucleotide= NM_133132;
FlyMine data for FBgn0030996.
BDGP gene expression has embryonic in situ data for CG14194: 4 pix of staining in 1 body parts.
BioGrid reports that CG14194 interacts with CG8487 .
VDRC has 2 RNAi stocks for FBgn0030996 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain246 24 of 4 1.10None
Head185 44 of 4 0.80Down
Eye224 84 of 4 0.99None
Thoracicoabdominal ganglion232 54 of 4 1.00None
Salivary gland388 274 of 4 1.72Up
Crop307 74 of 4 1.40Up
Midgut165 34 of 4 0.70Down
Tubule172 24 of 4 0.80Down
Hindgut240 14 of 4 1.10None
Heart196 114 of 4 0.87None
Fat body137 94 of 4 0.61Down
Ovary446 124 of 4 2.00Up
Testis191 74 of 4 0.80Down
Male accessory glands597 154 of 4 2.60Up
Virgin spermatheca232 144 of 4 1.03None
Mated spermatheca263 84 of 4 1.16Up
Adult carcass185 114 of 4 0.80Down
Larval CNS295 64 of 4 1.31Up
Larval Salivary gland346 94 of 4 1.53Up
Larval midgut295 224 of 4 1.31Up
Larval tubule330 74 of 4 1.50Up
Larval hindgut255 124 of 4 1.13None
Larval fat body284 124 of 4 1.30Up
Larval trachea402 254 of 4 1.78Up
Larval carcass279 184 of 4 1.24None
S2 cells (growing)426 54 of 4 1.88Up
Whole fly226 84 of 4

Looking for FBgn0030996. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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