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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030997 through 18771 annotations produced 1 hits



(CG7990):

Annotation Number : CG7990
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030997
Gbrowse : chrX:19090090-19095810 (-) // 100.0 //
Probeset : 1635963_a_at
Accessions : protein= NP_573361; /// NP_728226;, nucleotide= NM_133133; /// NM_167640;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
FlyMine data for FBgn0030997.
VDRC has 2 RNAi stocks for FBgn0030997 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain742 ± 44 of 418.50Up
Head281 ± 114 of 4 7.00Up
Eye415 ± 104 of 410.37Up
Thoracicoabdominal ganglion772 ± 214 of 419.30Up
Salivary gland26 ± 51 of 4 0.66None
Crop452 ± 154 of 411.30Up
Midgut70 ± 34 of 4 1.80Up
Tubule22 ± 13 of 4 0.60Down
Hindgut196 ± 34 of 4 4.90Up
Heart23 ± 54 of 4 0.58None
Fat body18 ± 40 of 4 0.47Down
Ovary7 ± 04 of 4 0.20Down
Testis15 ± 14 of 4 0.40Down
Male accessory glands38 ± 54 of 4 1.00None
Virgin spermatheca10 ± 11 of 4 0.25Down
Mated spermatheca15 ± 11 of 4 0.39Down
Adult carcass25 ± 33 of 4 0.60Down
Larval CNS255 ± 164 of 4 6.39Up
Larval Salivary gland12 ± 11 of 4 0.32Down
Larval midgut32 ± 24 of 4 0.82Down
Larval tubule15 ± 22 of 4 0.40Down
Larval hindgut93 ± 54 of 4 2.32Up
Larval fat body3 ± 10 of 4 0.10Down
Larval trachea7 ± 121 of 4 0.18Down
Larval carcass25 ± 10 of 4 0.63Down
S2 cells (growing)3 ± 00 of 4 0.09Down
Whole fly40 ± 04 of 4

Looking for FBgn0030997. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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