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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0030998 through 18771 annotations produced 1 hits


Annotation Number : CG14195
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030998
Gbrowse : chrX:19102853-19105391 (-) // 100.0 //
Probeset : 1623882_at
Accessions : protein= NP_728227;, nucleotide= NM_167641;
FlyMine data for FBgn0030998.
VDRC has 1 RNAi stocks for FBgn0030998 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 10 of 4 0.30Down
Head6 10 of 4 0.40Down
Eye5 20 of 4 0.36Down
Thoracicoabdominal ganglion8 20 of 4 0.50Down
Salivary gland15 70 of 4 0.93None
Crop9 30 of 4 0.50None
Midgut14 40 of 4 0.90None
Tubule460 144 of 427.90Up
Hindgut20 33 of 4 1.20None
Heart4 00 of 4 0.28Down
Fat body12 70 of 4 0.76None
Ovary5 20 of 4 0.30Down
Testis12 12 of 4 0.80None
Male accessory glands11 20 of 4 0.70None
Virgin spermatheca21 12 of 4 1.28None
Mated spermatheca18 22 of 4 1.12None
Adult carcass22 20 of 4 1.30None
Larval CNS3 10 of 4 0.21Down
Larval Salivary gland7 20 of 4 0.46Down
Larval midgut16 30 of 4 0.97None
Larval tubule540 264 of 432.70Up
Larval hindgut41 14 of 4 2.53Up
Larval fat body15 30 of 4 0.90None
Larval trachea11 50 of 4 0.67None
Larval carcass3 00 of 4 0.23Down
S2 cells (growing)8 20 of 4 0.50Down
Whole fly16 22 of 4

Looking for FBgn0030998. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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