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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031000 through 18771 annotations produced 1 hits



Mucin 18B (Muc18B):

Annotation Number : CG7876
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031000
Gbrowse : chrX:19109549-19110623 (+) // 100.0 //
Probeset : 1633621_at
Accessions : protein= NP_573365;, nucleotide= NM_133137;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0008061 // chitin binding // inferred from electronic annotation
FlyMine data for FBgn0031000.
BDGP gene expression has embryonic in situ data for CG7876: 9 pix of staining in 2 body parts.
VDRC has 1 RNAi stocks for FBgn0031000 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.30None
Head1 00 of 4 0.60None
Eye3 10 of 4 1.04None
Thoracicoabdominal ganglion1 00 of 4 0.40None
Salivary gland2 00 of 4 0.97None
Crop2 10 of 4 0.70None
Midgut27 10 of 4 9.30Up
Tubule14 20 of 4 4.80Up
Hindgut0 00 of 4 0.30None
Heart3 00 of 4 1.08None
Fat body1 00 of 4 0.33None
Ovary0 00 of 4 0.20None
Testis1 00 of 4 0.60None
Male accessory glands1 00 of 4 0.40None
Virgin spermatheca0 00 of 4 0.30None
Mated spermatheca1 00 of 4 0.55None
Adult carcass4 30 of 4 1.50None
Larval CNS0 00 of 4 0.26None
Larval Salivary gland1 00 of 4 0.58None
Larval midgut3928 2404 of 41320.58Up
Larval tubule9 00 of 4 3.20Up
Larval hindgut1 00 of 4 0.44None
Larval fat body2 10 of 4 0.70None
Larval trachea1 10 of 4 0.41None
Larval carcass1 00 of 4 0.58None
S2 cells (growing)1 00 of 4 0.40None
Whole fly3 00 of 4

Looking for FBgn0031000. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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