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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031002 through 18771 annotations produced 1 hits



(CG14196):

Annotation Number : CG14196
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031002
Gbrowse : chrX:19130209-19132500 (-) // 100.0 //
Probeset : 1638282_at
Accessions : protein= NP_573367;, nucleotide= NM_133139;
Interpro : 0015355 // secondary active monocarboxylate transmembrane transporter activity // inferred from sequence or structural s
FlyMine data for FBgn0031002.
Homophila reports that CG14196 is a close match (5e-11) to human gene HHF7;MCT1;SLC16A1 (NP_003042), a gene associated with Erythrocyte lactate transporter defect, 245340 (3);Hyperinsulinemic hypoglycemia, familial, 7, 610021 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain66 ± 24 of 4 1.20None
Head88 ± 94 of 4 1.50Up
Eye29 ± 54 of 4 0.51Down
Thoracicoabdominal ganglion111 ± 34 of 4 1.90Up
Salivary gland22 ± 20 of 4 0.40Down
Crop3 ± 10 of 4 0.10Down
Midgut162 ± 214 of 4 2.80Up
Tubule7 ± 00 of 4 0.10Down
Hindgut75 ± 24 of 4 1.30Up
Heart100 ± 44 of 4 1.75Up
Fat body259 ± 164 of 4 4.52Up
Ovary5 ± 10 of 4 0.10Down
Testis7 ± 10 of 4 0.10Down
Male accessory glands40 ± 24 of 4 0.70Down
Virgin spermatheca163 ± 104 of 4 2.85Up
Mated spermatheca137 ± 154 of 4 2.40Up
Adult carcass220 ± 124 of 4 3.90Up
Larval CNS5 ± 10 of 4 0.09Down
Larval Salivary gland1 ± 00 of 4 0.03Down
Larval midgut12 ± 60 of 4 0.22Down
Larval tubule3 ± 10 of 4 0.10Down
Larval hindgut7 ± 20 of 4 0.14Down
Larval fat body267 ± 284 of 4 4.70Up
Larval trachea4 ± 20 of 4 0.08Down
Larval carcass2 ± 00 of 4 0.04Down
S2 cells (growing)1 ± 00 of 4 0.03Down
Whole fly57 ± 34 of 4

Looking for FBgn0031002. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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