FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0031003 through 18771 annotations produced 1 hits

(CG7889):

Annotation Number : CG7889
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031003
Gbrowse : chrX:19137665-19139255 (+) // 100.0 //
Probeset : 1630917_at
Accessions : protein= NP_573368;, nucleotide= NM_133140;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0031003.
BDGP gene expression has embryonic in situ data for CG7889: 12 pix of staining in 6 body parts.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	29 ± 0	4 of 4	0.20	Down
Head	47 ± 3	4 of 4	0.40	Down
Eye	27 ± 2	4 of 4	0.20	Down
Thoracicoabdominal ganglion	28 ± 2	4 of 4	0.20	Down
Salivary gland	78 ± 3	4 of 4	0.58	Down
Crop	59 ± 1	4 of 4	0.40	Down
Midgut	106 ± 3	4 of 4	0.80	Down
Tubule	153 ± 5	4 of 4	1.10	Up
Hindgut	59 ± 1	4 of 4	0.40	Down
Heart	51 ± 10	4 of 4	0.38	Down
Fat body	72 ± 9	4 of 4	0.54	Down
Ovary	258 ± 3	4 of 4	1.90	Up
Testis	50 ± 2	4 of 4	0.40	Down
Male accessory glands	199 ± 9	4 of 4	1.50	Up
Virgin spermatheca	105 ± 3	4 of 4	0.79	Down
Mated spermatheca	113 ± 1	4 of 4	0.84	Down
Adult carcass	76 ± 4	4 of 4	0.60	Down
Larval CNS	91 ± 4	4 of 4	0.68	Down
Larval Salivary gland	174 ± 8	4 of 4	1.30	Up
Larval midgut	86 ± 3	4 of 4	0.64	Down
Larval tubule	84 ± 5	4 of 4	0.60	Down
Larval hindgut	76 ± 2	4 of 4	0.57	Down
Larval fat body	85 ± 4	4 of 4	0.60	Down
Larval trachea	111 ± 15	4 of 4	0.83	None
Larval carcass	95 ± 10	4 of 4	0.71	Down
S2 cells (growing)	121 ± 3	4 of 4	0.90	None
Whole fly	134 ± 6	4 of 4

Looking for FBgn0031003. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720