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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031004 through 18771 annotations produced 1 hits



(CG7992):

Annotation Number : CG7992
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031004
Gbrowse : chrX:19139183-19141252 (-) // 100.0 //
Probeset : 1634463_at
Accessions : protein= NP_573369;, nucleotide= NM_133141;
FlyMine data for FBgn0031004.
BDGP gene expression has embryonic in situ data for CG7992: 13 pix of staining in 4 body parts.
VDRC has 3 RNAi stocks for FBgn0031004 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 01 of 4 0.10Down
Head8 ± 10 of 4 0.10Down
Eye6 ± 10 of 4 0.06Down
Thoracicoabdominal ganglion5 ± 10 of 4 0.10Down
Salivary gland11 ± 41 of 4 0.12Down
Crop4 ± 21 of 4 0.10Down
Midgut883 ± 104 of 4 9.40Up
Tubule2093 ± 2504 of 422.30Up
Hindgut154 ± 44 of 4 1.60Up
Heart7 ± 00 of 4 0.08Down
Fat body16 ± 102 of 4 0.18Down
Ovary3 ± 10 of 4 0.00Down
Testis2 ± 10 of 4 0.00Down
Male accessory glands11 ± 20 of 4 0.10Down
Virgin spermatheca6 ± 00 of 4 0.07Down
Mated spermatheca6 ± 10 of 4 0.07Down
Adult carcass9 ± 41 of 4 0.10Down
Larval CNS2 ± 20 of 4 0.03Down
Larval Salivary gland11 ± 10 of 4 0.12Down
Larval midgut1308 ± 104 of 413.91Up
Larval tubule1216 ± 594 of 412.90Up
Larval hindgut126 ± 184 of 4 1.34None
Larval fat body17 ± 34 of 4 0.20Down
Larval trachea7 ± 10 of 4 0.08Down
Larval carcass2 ± 10 of 4 0.03Down
S2 cells (growing)3 ± 10 of 4 0.04Down
Whole fly94 ± 144 of 4

Looking for FBgn0031004. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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