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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0031008 through 18771 annotations produced 1 hits


Annotation Number : CG8010
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031008
Gbrowse : chrX:19160686-19162917 (-) // 100.0 //
Probeset : 1639544_at
Accessions : protein= NP_573373;, nucleotide= NM_133145;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0031008.
BDGP gene expression has embryonic in situ data for CG8010: 23 pix of staining in 11 body parts.
VDRC has 2 RNAi stocks for FBgn0031008 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain63 24 of 4 0.30Down
Head86 24 of 4 0.40Down
Eye159 44 of 4 0.67Down
Thoracicoabdominal ganglion70 24 of 4 0.30Down
Salivary gland150 94 of 4 0.63Down
Crop132 34 of 4 0.60Down
Midgut111 74 of 4 0.50Down
Tubule155 94 of 4 0.70Down
Hindgut114 64 of 4 0.50Down
Heart96 94 of 4 0.40Down
Fat body108 204 of 4 0.45Down
Ovary443 94 of 4 1.90Up
Testis47 14 of 4 0.20Down
Male accessory glands207 184 of 4 0.90None
Virgin spermatheca199 114 of 4 0.84None
Mated spermatheca221 94 of 4 0.93None
Adult carcass119 44 of 4 0.50Down
Larval CNS114 64 of 4 0.48Down
Larval Salivary gland176 14 of 4 0.74Down
Larval midgut89 34 of 4 0.38Down
Larval tubule83 44 of 4 0.40Down
Larval hindgut120 124 of 4 0.51Down
Larval fat body123 74 of 4 0.50Down
Larval trachea158 94 of 4 0.67Down
Larval carcass142 254 of 4 0.60Down
S2 cells (growing)189 94 of 4 0.80Down
Whole fly238 134 of 4

Looking for FBgn0031008. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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