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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031010 through 18771 annotations produced 1 hits



(CG8028):

Annotation Number : CG8028
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031010
Gbrowse : chrX:19171292-19174381 (-) // 99.8 //
Probeset : 1637575_at
Accessions : protein= NP_001097031; /// NP_573375;, nucleotide= NM_001103561; /// NM_133147;
Interpro : 0008028 // monocarboxylic acid transmembrane transporter activity // inferred from sequence or structural similarity
FlyMine data for FBgn0031010.
VDRC has 2 RNAi stocks for FBgn0031010 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 03 of 4 0.20Down
Head5 ± 10 of 4 0.20Down
Eye5 ± 10 of 4 0.17Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.10Down
Salivary gland19 ± 43 of 4 0.56Down
Crop7 ± 20 of 4 0.20Down
Midgut9 ± 23 of 4 0.30Down
Tubule2008 ± 2314 of 459.00Up
Hindgut8 ± 12 of 4 0.30Down
Heart5 ± 00 of 4 0.16Down
Fat body14 ± 64 of 4 0.41Down
Ovary4 ± 10 of 4 0.10Down
Testis6 ± 00 of 4 0.20Down
Male accessory glands10 ± 13 of 4 0.30Down
Virgin spermatheca11 ± 23 of 4 0.33Down
Mated spermatheca10 ± 14 of 4 0.30Down
Adult carcass13 ± 52 of 4 0.40Down
Larval CNS5 ± 04 of 4 0.16Down
Larval Salivary gland6 ± 21 of 4 0.19Down
Larval midgut10 ± 14 of 4 0.31Down
Larval tubule626 ± 544 of 418.40Up
Larval hindgut11 ± 24 of 4 0.35Down
Larval fat body9 ± 01 of 4 0.30Down
Larval trachea4 ± 21 of 4 0.14Down
Larval carcass6 ± 11 of 4 0.20Down
S2 cells (growing)13 ± 14 of 4 0.39Down
Whole fly34 ± 44 of 4

Looking for FBgn0031010. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime