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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0031011 through 18771 annotations produced 1 hits


Annotation Number : CG8034
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031011
Gbrowse : chrX:19176552-19178861 (-) // 100.0 //
Probeset : 1624273_at
Accessions : protein= NP_001162794; /// NP_573376;, nucleotide= NM_001169323; /// NM_133148;
FlyMine data for FBgn0031011.
BDGP gene expression has embryonic in situ data for CG8034: 25 pix of staining in 14 body parts.
Homophila reports that CG8034 is a close match (3e-11) to human gene HHF7;MCT1;SLC16A1 (NP_003042), a gene associated with Erythrocyte lactate transporter defect, 245340 (3);Hyperinsulinemic hypoglycemia, familial, 7, 610021 (3).
TRiP has 1 RNAi stocks for FBgn0031011 available for purchase.
VDRC has 1 RNAi stocks for FBgn0031011 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain28 24 of 4 0.70None
Head33 74 of 4 0.80None
Eye18 24 of 4 0.44None
Thoracicoabdominal ganglion15 03 of 4 0.40Down
Salivary gland68 24 of 4 1.66Up
Crop37 24 of 4 0.90None
Midgut126 14 of 4 3.10Up
Tubule10 00 of 4 0.30Down
Hindgut405 144 of 4 9.90Up
Heart57 24 of 4 1.40None
Fat body108 224 of 4 2.63Up
Ovary26 14 of 4 0.60None
Testis44 64 of 4 1.10None
Male accessory glands48 24 of 4 1.20None
Virgin spermatheca25 14 of 4 0.63None
Mated spermatheca18 24 of 4 0.44None
Adult carcass67 154 of 4 1.60None
Larval CNS14 34 of 4 0.36Down
Larval Salivary gland42 34 of 4 1.03None
Larval midgut81 34 of 4 1.97Up
Larval tubule16 14 of 4 0.40Down
Larval hindgut248 144 of 4 6.04Up
Larval fat body64 74 of 4 1.60None
Larval trachea24 24 of 4 0.59None
Larval carcass55 154 of 4 1.36None
S2 cells (growing)171 64 of 4 4.16Up
Whole fly41 74 of 4

Looking for FBgn0031011. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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