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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031016 through 18771 annotations produced 1 hits



kekkon-like (kek5):

Annotation Number : CG12199
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031016
Gbrowse : chrX:19247217-19364074 (+) // 100.0 //
Probeset : 1635273_s_at
Accessions : protein= NP_573382; /// NP_728242;, nucleotide= NM_133154; /// NM_167647;
Pathway : 0005886 // plasma membrane // inferred from direct assay
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0031016.
Homophila reports that CG12199 is a close match (3e-13) to human gene GREAT;LGR8 (NP_570718), a gene associated with Cryptorchidism, bilateral, 219050 (3).
BioGrid reports that CG12199 interacts with CG7524 .
TRiP has 1 RNAi stocks for FBgn0031016 available for purchase.
VDRC has 4 RNAi stocks for FBgn0031016 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain86 54 of 4 2.40Up
Head45 34 of 4 1.20None
Eye81 24 of 4 2.23Up
Thoracicoabdominal ganglion38 34 of 4 1.10None
Salivary gland71 34 of 4 1.97Up
Crop24 23 of 4 0.70None
Midgut49 24 of 4 1.40Up
Tubule28 13 of 4 0.80Down
Hindgut65 54 of 4 1.80Up
Heart43 24 of 4 1.19None
Fat body45 104 of 4 1.26None
Ovary48 14 of 4 1.30None
Testis14 04 of 4 0.40Down
Male accessory glands39 43 of 4 1.10None
Virgin spermatheca55 14 of 4 1.54Up
Mated spermatheca58 64 of 4 1.61Up
Adult carcass19 30 of 4 0.50Down
Larval CNS202 64 of 4 5.56Up
Larval Salivary gland74 44 of 4 2.04Up
Larval midgut67 74 of 4 1.86Up
Larval tubule31 24 of 4 0.90None
Larval hindgut66 54 of 4 1.83Up
Larval fat body28 44 of 4 0.80None
Larval trachea80 74 of 4 2.21Up
Larval carcass57 84 of 4 1.58None
S2 cells (growing)4 00 of 4 0.12Down
Whole fly36 44 of 4

Looking for FBgn0031016. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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