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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031021 through 18771 annotations produced 1 hits



NADH ubiquinone oxidoreductase 18 kDa (CG12203):

Annotation Number : CG12203
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031021
Gbrowse : chrX:19386455-19387373 (+) // 100.0 //
Probeset : 1632221_at
Accessions : protein= NP_573385;, nucleotide= NM_133157;
Pathway : 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005747 // mitochondrial respiratory
Interpro : "0005515 // protein binding // inferred from physical interaction /// 0008137 // NADH dehydrogenase (ubiquinone) activit
FlyMine data for FBgn0031021.
BDGP gene expression has embryonic in situ data for CG12203: 16 pix of staining in 13 body parts.
Homophila reports that CG12203 is a close match (3e-35) to human gene AQDQ;NDUFS4 (NP_002486), a gene associated with Leigh syndrome, 256000 (3);Mitochondrial complex I deficiency, 252010 (3).
VDRC has 2 RNAi stocks for FBgn0031021 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain842 164 of 4 1.10None
Head903 254 of 4 1.20Up
Eye1441 574 of 4 1.95Up
Thoracicoabdominal ganglion1042 344 of 4 1.40Up
Salivary gland1152 154 of 4 1.56Up
Crop599 154 of 4 0.80Down
Midgut726 384 of 4 1.00None
Tubule502 214 of 4 0.70Down
Hindgut1138 314 of 4 1.50Up
Heart857 164 of 4 1.16Up
Fat body800 454 of 4 1.08None
Ovary338 84 of 4 0.50Down
Testis261 34 of 4 0.40Down
Male accessory glands403 74 of 4 0.50Down
Virgin spermatheca432 214 of 4 0.59Down
Mated spermatheca341 144 of 4 0.46Down
Adult carcass1648 724 of 4 2.20Up
Larval CNS486 544 of 4 0.66Down
Larval Salivary gland735 104 of 4 1.00None
Larval midgut670 84 of 4 0.91None
Larval tubule534 564 of 4 0.70Down
Larval hindgut920 324 of 4 1.25Up
Larval fat body227 104 of 4 0.30Down
Larval trachea389 334 of 4 0.53Down
Larval carcass848 734 of 4 1.15None
S2 cells (growing)375 94 of 4 0.51Down
Whole fly738 394 of 4

Looking for FBgn0031021. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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