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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031023 through 18771 annotations produced 1 hits



(CG14200):

Annotation Number : CG14200
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031023
Gbrowse : chrX:19403978-19411265 (+) // 100.0 //
Probeset : 1634891_at
Accessions : protein= NP_573387;, nucleotide= NM_133159;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0008270 // zinc ion binding // inferred from electronic annotation
FlyMine data for FBgn0031023.
VDRC has 1 RNAi stocks for FBgn0031023 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain52 ± 54 of 4 3.90Up
Head16 ± 13 of 4 1.20None
Eye6 ± 22 of 4 0.48None
Thoracicoabdominal ganglion28 ± 34 of 4 2.00Up
Salivary gland19 ± 31 of 4 1.45None
Crop15 ± 22 of 4 1.20None
Midgut11 ± 20 of 4 0.90None
Tubule10 ± 10 of 4 0.70Down
Hindgut26 ± 24 of 4 1.90Up
Heart8 ± 23 of 4 0.58None
Fat body12 ± 41 of 4 0.91None
Ovary20 ± 24 of 4 1.50None
Testis3 ± 10 of 4 0.20Down
Male accessory glands13 ± 30 of 4 1.00None
Virgin spermatheca6 ± 20 of 4 0.46None
Mated spermatheca7 ± 00 of 4 0.56None
Adult carcass20 ± 42 of 4 1.50None
Larval CNS35 ± 84 of 4 2.57Up
Larval Salivary gland8 ± 21 of 4 0.65None
Larval midgut9 ± 10 of 4 0.72None
Larval tubule13 ± 13 of 4 1.00None
Larval hindgut10 ± 21 of 4 0.73None
Larval fat body15 ± 33 of 4 1.10None
Larval trachea4 ± 30 of 4 0.34Down
Larval carcass18 ± 01 of 4 1.36None
S2 cells (growing)35 ± 14 of 4 2.57Up
Whole fly13 ± 23 of 4

Looking for FBgn0031023. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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