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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031026 through 18771 annotations produced 1 hits



(CG12231):

Annotation Number : CG12231
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031026
Gbrowse : chrX:19425096-19425654 (-) // 100.0 //
Probeset : 1634171_at
Accessions : protein= NP_573390;, nucleotide= NM_133162;
FlyMine data for FBgn0031026.
BioGrid reports that CG12231 interacts with CG17358 .
VDRC has 1 RNAi stocks for FBgn0031026 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 00 of 4 0.40Down
Head3 ± 10 of 4 0.30Down
Eye4 ± 00 of 4 0.37Down
Thoracicoabdominal ganglion0 ± 00 of 4 0.10Down
Salivary gland8 ± 10 of 4 0.74None
Crop2 ± 10 of 4 0.20Down
Midgut5 ± 20 of 4 0.50None
Tubule4 ± 00 of 4 0.40Down
Hindgut2 ± 00 of 4 0.20Down
Heart2 ± 10 of 4 0.22Down
Fat body7 ± 40 of 4 0.65None
Ovary1 ± 00 of 4 0.10Down
Testis172 ± 104 of 415.10Up
Male accessory glands9 ± 11 of 4 0.80None
Virgin spermatheca9 ± 22 of 4 0.81None
Mated spermatheca12 ± 32 of 4 1.07None
Adult carcass8 ± 30 of 4 0.70None
Larval CNS4 ± 30 of 4 0.43Down
Larval Salivary gland4 ± 10 of 4 0.41Down
Larval midgut7 ± 20 of 4 0.66None
Larval tubule3 ± 10 of 4 0.30Down
Larval hindgut7 ± 20 of 4 0.64None
Larval fat body23 ± 72 of 4 2.00None
Larval trachea6 ± 20 of 4 0.54Down
Larval carcass4 ± 10 of 4 0.37Down
S2 cells (growing)5 ± 00 of 4 0.46Down
Whole fly11 ± 03 of 4

Looking for FBgn0031026. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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