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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031030 through 18771 annotations produced 1 hits



Tao-1 (Tao-1):

Annotation Number : CG14217
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031030
Gbrowse : chrX:19465201-19473842 (-) // 100.0 //
Probeset : 1639330_s_at
Accessions : protein= NP_608319; /// NP_728267; /// NP_728268; /// NP_728269;, nucleotide= NM_134475; /// NM_167665; /// NM_167666; /// NM_167667;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0031030.
BDGP gene expression has embryonic in situ data for CG14217: 19 pix of staining in 12 body parts.
Homophila reports that CG14217 is a close match (6e-11) to human gene BEK;CFD1;FGFR2;JWS (NP_075259), a gene associated with Antley-Bixler syndrome, 207410 (;Apert syndrome, 101200 (3);Beare-Stevenson cutis gyrata syndrome, 123790 (3);Craniofacial-skeletal-dermatologic dysplasia (3);Craniosynostosis, nonspecific (3);Crouzon syndrome, 123500 (3);Gastric cancer, somatic, 137215 (3);Jackson-Weiss syndrome, 123150 (3);Pfeiffer syndrome, 101600 (3);Saethre-Chotzen syndrome, 101400 (3).
BioGrid reports that CG14217 interacts with CG31992 CG15524 CG3085 CG6290 .
TRiP has 4 RNAi stocks for FBgn0031030 available for purchase.
VDRC has 2 RNAi stocks for FBgn0031030 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain401 ± 124 of 4 1.20None
Head103 ± 114 of 4 0.30Down
Eye561 ± 154 of 4 1.67Up
Thoracicoabdominal ganglion349 ± 524 of 4 1.00None
Salivary gland59 ± 93 of 4 0.18Down
Crop174 ± 104 of 4 0.50Down
Midgut114 ± 44 of 4 0.30Down
Tubule103 ± 34 of 4 0.30Down
Hindgut158 ± 104 of 4 0.50Down
Heart314 ± 94 of 4 0.93None
Fat body89 ± 124 of 4 0.26Down
Ovary1000 ± 254 of 4 3.00Up
Testis35 ± 24 of 4 0.10Down
Male accessory glands104 ± 74 of 4 0.30Down
Virgin spermatheca116 ± 54 of 4 0.35Down
Mated spermatheca135 ± 54 of 4 0.40Down
Adult carcass104 ± 114 of 4 0.30Down
Larval CNS274 ± 204 of 4 0.82None
Larval Salivary gland79 ± 44 of 4 0.24Down
Larval midgut116 ± 54 of 4 0.34Down
Larval tubule159 ± 84 of 4 0.50Down
Larval hindgut136 ± 164 of 4 0.41Down
Larval fat body113 ± 54 of 4 0.30Down
Larval trachea543 ± 434 of 4 1.61Up
Larval carcass89 ± 74 of 4 0.27Down
S2 cells (growing)470 ± 84 of 4 1.40Up
Whole fly337 ± 274 of 4

Looking for FBgn0031030. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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