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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031039 through 18771 annotations produced 1 hits



Shawn /// Tyler (Shawn /// Tyler):

Annotation Number : CG33075
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031038 /// FBgn0031039
Gbrowse : chrX:19505558-19509647 (+) // 100.0 //
Probeset : 1627973_s_at
Accessions : protein= NP_001027071; /// NP_001027072; /// NP_001027073; /// NP_608327; /// NP_728278;, nucleotide= NM_001031900; /// NM_001031901; /// NM_001031902; /// NM_134483; /// NM_167671;
Pathway : 0005740 // mitochondrial envelope // inferred from sequence or structural similarity /// 0005743 // mitochondrial inner
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electroni
FlyMine data for FBgn0031038 /// FBgn0031039.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain121 ± 24 of 4 1.30Up
Head87 ± 54 of 4 0.90None
Eye127 ± 34 of 4 1.38Up
Thoracicoabdominal ganglion122 ± 34 of 4 1.30Up
Salivary gland88 ± 64 of 4 0.96None
Crop86 ± 54 of 4 0.90None
Midgut83 ± 04 of 4 0.90None
Tubule232 ± 304 of 4 2.50Up
Hindgut96 ± 44 of 4 1.00None
Heart54 ± 34 of 4 0.59Down
Fat body99 ± 114 of 4 1.07None
Ovary112 ± 24 of 4 1.20Up
Testis245 ± 64 of 4 2.70Up
Male accessory glands77 ± 24 of 4 0.80None
Virgin spermatheca80 ± 74 of 4 0.87None
Mated spermatheca91 ± 54 of 4 0.99None
Adult carcass83 ± 54 of 4 0.90None
Larval CNS50 ± 34 of 4 0.55Down
Larval Salivary gland71 ± 34 of 4 0.77Down
Larval midgut50 ± 24 of 4 0.55Down
Larval tubule91 ± 64 of 4 1.00None
Larval hindgut55 ± 14 of 4 0.60Down
Larval fat body80 ± 84 of 4 0.90None
Larval trachea44 ± 14 of 4 0.49Down
Larval carcass52 ± 34 of 4 0.57Down
S2 cells (growing)89 ± 34 of 4 0.97None
Whole fly92 ± 54 of 4

Looking for FBgn0031039. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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