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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031040 through 18771 annotations produced 1 hits



(CG14210):

Annotation Number : CG14210
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031040
Gbrowse : chrX:19510239-19510858 (+) // 100.0 //
Probeset : 1624635_at
Accessions : protein= NP_608328;, nucleotide= NM_134484;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0031040.
BioGrid reports that CG14210 interacts with CG2052 CG33130 CG4087 .
VDRC has 5 RNAi stocks for FBgn0031040 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain67 ± 14 of 4 0.30Down
Head106 ± 74 of 4 0.50Down
Eye60 ± 14 of 4 0.28Down
Thoracicoabdominal ganglion64 ± 44 of 4 0.30Down
Salivary gland88 ± 24 of 4 0.42Down
Crop97 ± 54 of 4 0.50Down
Midgut130 ± 94 of 4 0.60Down
Tubule62 ± 34 of 4 0.30Down
Hindgut69 ± 54 of 4 0.30Down
Heart93 ± 34 of 4 0.44Down
Fat body158 ± 114 of 4 0.75None
Ovary355 ± 84 of 4 1.70Up
Testis33 ± 24 of 4 0.20Down
Male accessory glands320 ± 114 of 4 1.50Up
Virgin spermatheca59 ± 34 of 4 0.28Down
Mated spermatheca77 ± 04 of 4 0.37Down
Adult carcass91 ± 54 of 4 0.40Down
Larval CNS246 ± 164 of 4 1.16None
Larval Salivary gland154 ± 224 of 4 0.73None
Larval midgut83 ± 94 of 4 0.40Down
Larval tubule53 ± 54 of 4 0.30Down
Larval hindgut88 ± 124 of 4 0.42Down
Larval fat body46 ± 94 of 4 0.20Down
Larval trachea218 ± 384 of 4 1.03None
Larval carcass170 ± 294 of 4 0.81None
S2 cells (growing)201 ± 64 of 4 0.95None
Whole fly211 ± 244 of 4

Looking for FBgn0031040. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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