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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031042 through 18771 annotations produced 1 hits



(CG14221):

Annotation Number : CG14221
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031042
Gbrowse : chrX:19512961-19515151 (-) // 100.0 //
Probeset : 1633825_at
Accessions : protein= NP_608330;, nucleotide= NM_134486;
FlyMine data for FBgn0031042.
Homophila reports that CG14221 is a close match (1e-12) to human gene CILD6;SPTRX2;TXNDC3 (NP_057700), a gene associated with Ciliary dyskinesia, primary, 6, 610852 (3).
VDRC has 2 RNAi stocks for FBgn0031042 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 10 of 4 1.80None
Head22 44 of 4 6.20Up
Eye67 84 of 418.90Up
Thoracicoabdominal ganglion4 10 of 4 1.30None
Salivary gland8 40 of 4 2.39None
Crop4 20 of 4 1.20None
Midgut5 10 of 4 1.70None
Tubule4 00 of 4 1.30None
Hindgut5 10 of 4 1.40None
Heart2 00 of 4 0.57None
Fat body4 20 of 4 1.34None
Ovary4 11 of 4 1.40None
Testis3 10 of 4 1.10None
Male accessory glands3 00 of 4 0.90None
Virgin spermatheca1 00 of 4 0.48None
Mated spermatheca2 10 of 4 0.69None
Adult carcass4 00 of 4 1.20None
Larval CNS3 10 of 4 0.92None
Larval Salivary gland5 20 of 4 1.64None
Larval midgut8 00 of 4 2.38Up
Larval tubule7 20 of 4 2.20None
Larval hindgut2 10 of 4 0.73None
Larval fat body8 10 of 4 2.20Up
Larval trachea3 40 of 4 1.09None
Larval carcass6 10 of 4 1.95None
S2 cells (growing)8 10 of 4 2.51Up
Whole fly3 00 of 4

Looking for FBgn0031042. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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