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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031048 through 18771 annotations produced 1 hits



(CG12237):

Annotation Number : CG12237
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031048
Gbrowse : chrX:19535222-19536899 (-) // 100.0 //
Probeset : 1628920_at
Accessions : protein= NP_608336;, nucleotide= NM_134492;
Interpro : 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred fro
FlyMine data for FBgn0031048.
BDGP gene expression has embryonic in situ data for CG12237: 8 pix of staining in 1 body parts.
BioGrid reports that CG12237 interacts with CG13627 Dmel CG34110 .
TRiP has 1 RNAi stocks for FBgn0031048 available for purchase.
VDRC has 1 RNAi stocks for FBgn0031048 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain380 174 of 4 1.40Up
Head279 284 of 4 1.10None
Eye568 194 of 4 2.15Up
Thoracicoabdominal ganglion335 34 of 4 1.30None
Salivary gland288 184 of 4 1.09None
Crop339 94 of 4 1.30None
Midgut181 104 of 4 0.70None
Tubule384 154 of 4 1.40Up
Hindgut394 104 of 4 1.50Up
Heart413 254 of 4 1.56Up
Fat body220 224 of 4 0.83None
Ovary319 54 of 4 1.20None
Testis83 14 of 4 0.30Down
Male accessory glands245 304 of 4 0.90None
Virgin spermatheca205 104 of 4 0.78None
Mated spermatheca262 64 of 4 0.99None
Adult carcass198 74 of 4 0.80None
Larval CNS310 294 of 4 1.17None
Larval Salivary gland302 204 of 4 1.14None
Larval midgut169 134 of 4 0.64None
Larval tubule199 64 of 4 0.80None
Larval hindgut294 294 of 4 1.11None
Larval fat body126 124 of 4 0.50Down
Larval trachea601 134 of 4 2.27Up
Larval carcass201 134 of 4 0.76None
S2 cells (growing)472 104 of 4 1.78Up
Whole fly265 344 of 4

Looking for FBgn0031048. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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