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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031049 through 18771 annotations produced 1 hits



March 2006 (FlyBase/BDGP 5.3) (chrX:19537364-19538528 (+) // 100.0 //):

Annotation Number : CG14214
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse :
Probeset : 1628429_at
Accessions : protein= , nucleotide=
Interpro : "0006605 // protein targeting // inferred from electronic annotation /// 0006616 // SRP-dependent cotranslational protei


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain592 ± 214 of 4 0.50Down
Head846 ± 544 of 4 0.80Down
Eye748 ± 284 of 4 0.68Down
Thoracicoabdominal ganglion505 ± 134 of 4 0.50Down
Salivary gland3134 ± 614 of 4 2.84Up
Crop825 ± 344 of 4 0.70Down
Midgut1504 ± 524 of 4 1.40Up
Tubule666 ± 364 of 4 0.60Down
Hindgut741 ± 74 of 4 0.70Down
Heart992 ± 644 of 4 0.90None
Fat body1583 ± 1584 of 4 1.43Up
Ovary1307 ± 314 of 4 1.20Up
Testis961 ± 174 of 4 0.90None
Male accessory glands3693 ± 1384 of 4 3.30Up
Virgin spermatheca928 ± 404 of 4 0.84Down
Mated spermatheca1356 ± 1424 of 4 1.23None
Adult carcass816 ± 354 of 4 0.70Down
Larval CNS1140 ± 314 of 4 1.03None
Larval Salivary gland3254 ± 1724 of 4 2.95Up
Larval midgut1650 ± 504 of 4 1.50Up
Larval tubule625 ± 324 of 4 0.60Down
Larval hindgut1260 ± 874 of 4 1.14None
Larval fat body2287 ± 3094 of 4 2.10Up
Larval trachea1696 ± 3974 of 4 1.54None
Larval carcass1501 ± 1434 of 4 1.36None
S2 cells (growing)1274 ± 274 of 4 1.16Up
Whole fly1103 ± 474 of 4

Looking for FBgn0031049. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime