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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031051 through 18771 annotations produced 1 hits



Ranbp21 (Ranbp21):

Annotation Number : CG12234
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031051
Gbrowse : chrX:19540616-19545958 (-) // 100.0 //
Probeset : 1641247_at
Accessions : protein= NP_608339;, nucleotide= NM_134495;
Interpro : 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical inter
FlyMine data for FBgn0031051.
BioGrid reports that CG12234 interacts with CG5642 .
VDRC has 2 RNAi stocks for FBgn0031051 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain131 ± 14 of 4 0.70Down
Head88 ± 14 of 4 0.50Down
Eye87 ± 34 of 4 0.49Down
Thoracicoabdominal ganglion146 ± 64 of 4 0.80Down
Salivary gland127 ± 44 of 4 0.71Down
Crop105 ± 74 of 4 0.60Down
Midgut102 ± 64 of 4 0.60Down
Tubule90 ± 34 of 4 0.50Down
Hindgut77 ± 24 of 4 0.40Down
Heart89 ± 54 of 4 0.50Down
Fat body130 ± 104 of 4 0.73Down
Ovary517 ± 104 of 4 2.90Up
Testis66 ± 24 of 4 0.40Down
Male accessory glands227 ± 144 of 4 1.30Up
Virgin spermatheca150 ± 134 of 4 0.84None
Mated spermatheca180 ± 64 of 4 1.00None
Adult carcass104 ± 54 of 4 0.60Down
Larval CNS281 ± 144 of 4 1.57Up
Larval Salivary gland309 ± 144 of 4 1.73Up
Larval midgut112 ± 34 of 4 0.63Down
Larval tubule124 ± 24 of 4 0.70Down
Larval hindgut150 ± 114 of 4 0.84None
Larval fat body104 ± 54 of 4 0.60Down
Larval trachea209 ± 204 of 4 1.16None
Larval carcass171 ± 144 of 4 0.96None
S2 cells (growing)293 ± 164 of 4 1.64Up
Whole fly179 ± 64 of 4

Looking for FBgn0031051. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime