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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0031052 through 18771 annotations produced 1 hits


Annotation Number : CG14215
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031052
Gbrowse : chrX:19546339-19553444 (+) // 100.0 //
Probeset : 1623874_at
Accessions : protein= NP_608340;, nucleotide= NM_134496;
FlyMine data for FBgn0031052.
BioGrid reports that CG14215 interacts with CG9373 .
VDRC has 1 RNAi stocks for FBgn0031052 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain274 154 of 4 2.90Up
Head66 54 of 4 0.70Down
Eye52 54 of 4 0.55Down
Thoracicoabdominal ganglion335 34 of 4 3.50Up
Salivary gland43 42 of 4 0.46Down
Crop45 24 of 4 0.50Down
Midgut42 21 of 4 0.40Down
Tubule27 13 of 4 0.30Down
Hindgut36 34 of 4 0.40Down
Heart27 24 of 4 0.29Down
Fat body28 82 of 4 0.30Down
Ovary213 54 of 4 2.20Up
Testis189 84 of 4 2.00Up
Male accessory glands53 74 of 4 0.60Down
Virgin spermatheca21 13 of 4 0.22Down
Mated spermatheca32 44 of 4 0.34Down
Adult carcass38 53 of 4 0.40Down
Larval CNS230 84 of 4 2.42Up
Larval Salivary gland103 54 of 4 1.09None
Larval midgut56 24 of 4 0.59Down
Larval tubule32 04 of 4 0.30Down
Larval hindgut51 14 of 4 0.54Down
Larval fat body44 144 of 4 0.50Down
Larval trachea121 104 of 4 1.27Up
Larval carcass68 24 of 4 0.72Down
S2 cells (growing)67 14 of 4 0.70Down
Whole fly95 84 of 4

Looking for FBgn0031052. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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