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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031053 through 18771 annotations produced 1 hits



(CG14223):

Annotation Number : CG14223
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031053
Gbrowse : chrX:19553744-19555555 (-) // 100.0 //
Probeset : 1625870_at
Accessions : protein= NP_608341;, nucleotide= NM_134497;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0031053.
BioGrid reports that CG14223 interacts with CG14671 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 01 of 4 0.60Down
Head10 02 of 4 1.00None
Eye7 12 of 4 0.78None
Thoracicoabdominal ganglion7 10 of 4 0.70None
Salivary gland13 11 of 4 1.29None
Crop21 34 of 4 2.10Up
Midgut13 11 of 4 1.30None
Tubule7 02 of 4 0.70Down
Hindgut5 10 of 4 0.50Down
Heart6 12 of 4 0.65None
Fat body8 32 of 4 0.84None
Ovary14 14 of 4 1.50None
Testis13 14 of 4 1.40None
Male accessory glands18 23 of 4 1.80Up
Virgin spermatheca11 02 of 4 1.13None
Mated spermatheca9 11 of 4 0.92None
Adult carcass15 31 of 4 1.50None
Larval CNS15 54 of 4 1.54None
Larval Salivary gland17 24 of 4 1.72None
Larval midgut10 11 of 4 0.99None
Larval tubule7 12 of 4 0.70None
Larval hindgut5 01 of 4 0.52Down
Larval fat body11 21 of 4 1.20None
Larval trachea8 11 of 4 0.84None
Larval carcass26 24 of 4 2.64Up
S2 cells (growing)15 14 of 4 1.48Up
Whole fly10 13 of 4

Looking for FBgn0031053. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime