FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0031054 through 18771 annotations produced 2 hits

(CG14216):

Annotation Number : CG14216
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031054
Gbrowse : chrX:19558599-19560908 (+) // 100.0 //
Probeset : 1627956_x_at
Accessions : protein= NP_608342;, nucleotide= NM_134498;
Pathway : 0005634 // nucleus // inferred from electronic annotation
Interpro : 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation
FlyMine data for FBgn0031054.
BDGP gene expression has embryonic in situ data for CG14216: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0031054 available for purchase.
VDRC has 2 RNAi stocks for FBgn0031054 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	84 ± 4	4 of 4	1.60	Up
Head	60 ± 5	4 of 4	1.10	None
Eye	55 ± 1	4 of 4	1.06	None
Thoracicoabdominal ganglion	67 ± 3	4 of 4	1.30	None
Salivary gland	87 ± 10	4 of 4	1.65	Up
Crop	39 ± 1	4 of 4	0.80	None
Midgut	33 ± 3	4 of 4	0.60	Down
Tubule	57 ± 3	4 of 4	1.10	None
Hindgut	31 ± 3	4 of 4	0.60	Down
Heart	31 ± 6	4 of 4	0.60	Down
Fat body	58 ± 6	4 of 4	1.11	None
Ovary	81 ± 3	4 of 4	1.50	Up
Testis	10 ± 1	4 of 4	0.20	Down
Male accessory glands	33 ± 2	4 of 4	0.60	Down
Virgin spermatheca	97 ± 2	4 of 4	1.84	Up
Mated spermatheca	67 ± 6	4 of 4	1.27	None
Adult carcass	39 ± 4	4 of 4	0.70	None
Larval CNS	166 ± 2	4 of 4	3.14	Up
Larval Salivary gland	39 ± 3	4 of 4	0.74	None
Larval midgut	42 ± 5	4 of 4	0.80	None
Larval tubule	55 ± 4	4 of 4	1.00	None
Larval hindgut	46 ± 4	4 of 4	0.87	None
Larval fat body	34 ± 4	4 of 4	0.70	Down
Larval trachea	47 ± 2	4 of 4	0.89	None
Larval carcass	56 ± 6	4 of 4	1.07	None
S2 cells (growing)	93 ± 2	4 of 4	1.76	Up
Whole fly	53 ± 5	4 of 4

(CG14216):

Annotation Number : CG14216
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031054
Gbrowse : chrX:19558599-19560908 (+) // 100.0 //
Probeset : 1639207_at
Accessions : protein= NP_608342;, nucleotide= NM_134498;
Pathway : 0005634 // nucleus // inferred from electronic annotation
Interpro : 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation
FlyMine data for FBgn0031054.
BDGP gene expression has embryonic in situ data for CG14216: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0031054 available for purchase.
VDRC has 2 RNAi stocks for FBgn0031054 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	52 ± 3	4 of 4	1.70	Up
Head	40 ± 2	4 of 4	1.30	None
Eye	27 ± 3	4 of 4	0.88	None
Thoracicoabdominal ganglion	49 ± 5	4 of 4	1.60	Up
Salivary gland	67 ± 11	4 of 4	2.22	Up
Crop	24 ± 1	4 of 4	0.80	None
Midgut	29 ± 0	4 of 4	1.00	None
Tubule	40 ± 3	4 of 4	1.30	Up
Hindgut	30 ± 2	4 of 4	1.00	None
Heart	22 ± 1	4 of 4	0.73	None
Fat body	44 ± 7	4 of 4	1.44	Up
Ovary	61 ± 1	4 of 4	2.00	Up
Testis	11 ± 2	4 of 4	0.40	Down
Male accessory glands	32 ± 1	4 of 4	1.10	None
Virgin spermatheca	59 ± 4	4 of 4	1.96	Up
Mated spermatheca	43 ± 1	4 of 4	1.44	Up
Adult carcass	31 ± 2	4 of 4	1.00	None
Larval CNS	111 ± 10	4 of 4	3.66	Up
Larval Salivary gland	28 ± 1	4 of 4	0.92	None
Larval midgut	31 ± 4	4 of 4	1.03	None
Larval tubule	38 ± 1	4 of 4	1.30	None
Larval hindgut	33 ± 2	4 of 4	1.10	None
Larval fat body	22 ± 2	4 of 4	0.70	None
Larval trachea	28 ± 2	4 of 4	0.93	None
Larval carcass	42 ± 5	4 of 4	1.41	None
S2 cells (growing)	57 ± 1	4 of 4	1.87	Up
Whole fly	30 ± 3	4 of 4

Looking for FBgn0031054. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720