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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031059 through 18771 annotations produced 1 hits



(CG14229):

Annotation Number : CG14229
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031059
Gbrowse : chrX:19588225-19589074 (-) // 100.0 //
Probeset : 1638801_at
Accessions : protein= NP_608346;, nucleotide= NM_134502;
FlyMine data for FBgn0031059.
BDGP gene expression has embryonic in situ data for CG14229: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0031059 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain263 124 of 4 1.20None
Head160 64 of 4 0.70Down
Eye169 34 of 4 0.75Down
Thoracicoabdominal ganglion381 44 of 4 1.70Up
Salivary gland236 144 of 4 1.04None
Crop289 54 of 4 1.30Up
Midgut213 104 of 4 0.90None
Tubule140 84 of 4 0.60Down
Hindgut213 54 of 4 0.90None
Heart208 114 of 4 0.92None
Fat body127 44 of 4 0.56Down
Ovary472 144 of 4 2.10Up
Testis314 154 of 4 1.40Up
Male accessory glands283 104 of 4 1.20Up
Virgin spermatheca250 154 of 4 1.11None
Mated spermatheca257 104 of 4 1.14None
Adult carcass157 84 of 4 0.70Down
Larval CNS305 244 of 4 1.35Up
Larval Salivary gland255 94 of 4 1.13Up
Larval midgut199 94 of 4 0.88None
Larval tubule295 154 of 4 1.30Up
Larval hindgut199 114 of 4 0.88None
Larval fat body304 104 of 4 1.30Up
Larval trachea237 234 of 4 1.05None
Larval carcass212 134 of 4 0.94None
S2 cells (growing)314 94 of 4 1.39Up
Whole fly226 34 of 4

Looking for FBgn0031059. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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