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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031061 through 18771 annotations produced 1 hits



(CG14232):

Annotation Number : CG14232
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031061
Gbrowse : chrX:19596014-19598178 (-) // 100.0 //
Probeset : 1640794_at
Accessions : protein= NP_608348;, nucleotide= NM_134504;
Interpro : 0000062 // acyl-CoA binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic an
FlyMine data for FBgn0031061.
BioGrid reports that CG14232 interacts with CG15092 CG4080 CG4955 CG9356 CG17085 CG33144 CG4095 CG6447 CG6478 Dmel CG14425 .
VDRC has 3 RNAi stocks for FBgn0031061 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain170 44 of 4 1.50Up
Head117 24 of 4 1.00None
Eye343 164 of 4 3.05Up
Thoracicoabdominal ganglion173 54 of 4 1.50Up
Salivary gland132 44 of 4 1.17Up
Crop75 34 of 4 0.70Down
Midgut69 24 of 4 0.60Down
Tubule104 34 of 4 0.90Down
Hindgut70 24 of 4 0.60Down
Heart54 14 of 4 0.49Down
Fat body32 34 of 4 0.29Down
Ovary189 64 of 4 1.70Up
Testis255 104 of 4 2.30Up
Male accessory glands171 64 of 4 1.50Up
Virgin spermatheca84 34 of 4 0.75Down
Mated spermatheca97 64 of 4 0.86None
Adult carcass60 64 of 4 0.50Down
Larval CNS160 104 of 4 1.42Up
Larval Salivary gland168 64 of 4 1.49Up
Larval midgut87 24 of 4 0.77Down
Larval tubule124 54 of 4 1.10None
Larval hindgut82 44 of 4 0.73Down
Larval fat body91 144 of 4 0.80None
Larval trachea105 34 of 4 0.93Down
Larval carcass100 24 of 4 0.89Down
S2 cells (growing)119 14 of 4 1.06None
Whole fly112 24 of 4

Looking for FBgn0031061. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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