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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031064 through 18771 annotations produced 2 hits



(CG12531):

Annotation Number : HDC19782
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031064
Gbrowse : chrX:19613767-19615857 (+) // 100.0 //
Probeset : 1623614_at
Accessions : protein= NP_608350;, nucleotide= NM_134506;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0015171 // amino acid transmembrane transporter activity // inferred from sequence or structural similarity /// 0015171
FlyMine data for FBgn0031064.
VDRC has 3 RNAi stocks for FBgn0031064 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.40None
Head0 ± 00 of 4 0.20None
Eye2 ± 00 of 4 0.86None
Thoracicoabdominal ganglion3 ± 10 of 4 1.00None
Salivary gland2 ± 00 of 4 0.73None
Crop1 ± 00 of 4 0.30None
Midgut2 ± 10 of 4 0.70None
Tubule1 ± 00 of 4 0.50Down
Hindgut1 ± 00 of 4 0.50None
Heart3 ± 10 of 4 0.97None
Fat body5 ± 10 of 4 1.54None
Ovary0 ± 00 of 4 0.20None
Testis3 ± 00 of 4 1.00None
Male accessory glands1 ± 00 of 4 0.40None
Virgin spermatheca3 ± 10 of 4 0.86None
Mated spermatheca3 ± 10 of 4 1.10None
Adult carcass3 ± 00 of 4 1.00None
Larval CNS2 ± 00 of 4 0.78None
Larval Salivary gland1 ± 00 of 4 0.53None
Larval midgut1 ± 00 of 4 0.32None
Larval tubule2 ± 10 of 4 0.80None
Larval hindgut1 ± 00 of 4 0.51None
Larval fat body2 ± 00 of 4 0.70None
Larval trachea1 ± 00 of 4 0.31None
Larval carcass1 ± 00 of 4 0.48None
S2 cells (growing)1 ± 00 of 4 0.33None
Whole fly3 ± 10 of 4



(CG12531):

Annotation Number : CG12531
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031064
Gbrowse : chrX:19616744-19620719 (+) // 99.5 //
Probeset : 1624358_at
Accessions : protein= NP_608350;, nucleotide= NM_134506;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0015171 // amino acid transmembrane transporter activity // inferred from sequence or structural similarity /// 0015171
FlyMine data for FBgn0031064.
VDRC has 3 RNAi stocks for FBgn0031064 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain18 ± 24 of 4 7.30Up
Head2 ± 10 of 4 1.10None
Eye0 ± 00 of 4 0.23None
Thoracicoabdominal ganglion8 ± 31 of 4 3.20None
Salivary gland3 ± 10 of 4 1.34None
Crop1 ± 00 of 4 0.50None
Midgut1 ± 00 of 4 0.50None
Tubule2 ± 00 of 4 0.90None
Hindgut0 ± 00 of 4 0.30None
Heart0 ± 00 of 4 0.22None
Fat body1 ± 00 of 4 0.51None
Ovary1 ± 00 of 4 0.60None
Testis4 ± 10 of 4 1.60None
Male accessory glands2 ± 00 of 4 1.00None
Virgin spermatheca0 ± 00 of 4 0.37None
Mated spermatheca1 ± 00 of 4 0.69None
Adult carcass1 ± 00 of 4 0.50None
Larval CNS3 ± 20 of 4 1.30None
Larval Salivary gland1 ± 00 of 4 0.41None
Larval midgut1 ± 00 of 4 0.41None
Larval tubule2 ± 10 of 4 1.00None
Larval hindgut0 ± 00 of 4 0.32None
Larval fat body4 ± 10 of 4 1.90None
Larval trachea0 ± 00 of 4 0.35None
Larval carcass1 ± 00 of 4 0.47None
S2 cells (growing)1 ± 00 of 4 0.52None
Whole fly2 ± 10 of 4

Looking for FBgn0031064. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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