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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031069 through 18771 annotations produced 1 hits



(CG12703):

Annotation Number : CG12703
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031069
Gbrowse : chrX:19644832-19653323 (+) // 100.0 //
Probeset : 1629413_at
Accessions : protein= NP_608354;, nucleotide= NM_134510;
Pathway : 0005779 // integral to peroxisomal membrane // inferred from sequence or structural similarity /// 0016020 // membrane /
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0005215 // transporter activity // inferred fr
FlyMine data for FBgn0031069.
Homophila reports that CG12703 is a close match (8e-11) to human gene ABCB2;PSF1;RING4;TAP1 (NP_000584), a gene associated with Bare lymphocyte syndrome, type I, 604571 (3).
BioGrid reports that CG12703 interacts with CG9547 CG15141 CG2017 CG3858 CG5225 CG7948 CG8284 CG8506 CG9520 .
TRiP has 1 RNAi stocks for FBgn0031069 available for purchase.
VDRC has 1 RNAi stocks for FBgn0031069 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain310 74 of 4 0.50Down
Head589 294 of 4 1.00None
Eye295 184 of 4 0.52Down
Thoracicoabdominal ganglion333 34 of 4 0.60Down
Salivary gland885 174 of 4 1.55Up
Crop1680 414 of 4 3.00Up
Midgut1949 624 of 4 3.40Up
Tubule315 174 of 4 0.60Down
Hindgut1724 994 of 4 3.00Up
Heart1177 894 of 4 2.07Up
Fat body2436 594 of 4 4.28Up
Ovary398 94 of 4 0.70Down
Testis49 14 of 4 0.10Down
Male accessory glands342 134 of 4 0.60Down
Virgin spermatheca707 264 of 4 1.24Up
Mated spermatheca575 294 of 4 1.01None
Adult carcass1536 674 of 4 2.70Up
Larval CNS236 54 of 4 0.41Down
Larval Salivary gland585 294 of 4 1.03None
Larval midgut1546 664 of 4 2.71Up
Larval tubule471 114 of 4 0.80Down
Larval hindgut593 74 of 4 1.04None
Larval fat body225 164 of 4 0.40Down
Larval trachea255 184 of 4 0.45Down
Larval carcass540 194 of 4 0.95None
S2 cells (growing)355 74 of 4 0.62Down
Whole fly569 194 of 4

Looking for FBgn0031069. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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