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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0031070 through 18771 annotations produced 1 hits


Annotation Number : CG12702
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031070
Gbrowse : chrX:19653200-19656356 (-) // 100.0 //
Probeset : 1634457_at
Accessions : protein= NP_608355;, nucleotide= NM_134511;
FlyMine data for FBgn0031070.
BDGP gene expression has embryonic in situ data for CG12702: 13 pix of staining in 6 body parts.
VDRC has 2 RNAi stocks for FBgn0031070 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.10Down
Head5 00 of 4 0.10Down
Eye1 00 of 4 0.02Down
Thoracicoabdominal ganglion1 00 of 4 0.00Down
Salivary gland10 10 of 4 0.21Down
Crop7 00 of 4 0.10Down
Midgut5 10 of 4 0.10Down
Tubule4 00 of 4 0.10Down
Hindgut6 10 of 4 0.10Down
Heart1 00 of 4 0.03Down
Fat body6 10 of 4 0.12Down
Ovary110 34 of 4 2.20Up
Testis54 44 of 4 1.10None
Male accessory glands6 20 of 4 0.10Down
Virgin spermatheca2 00 of 4 0.04Down
Mated spermatheca3 00 of 4 0.07Down
Adult carcass7 31 of 4 0.10Down
Larval CNS115 104 of 4 2.32Up
Larval Salivary gland4 21 of 4 0.09Down
Larval midgut9 10 of 4 0.19Down
Larval tubule2 10 of 4 0.10Down
Larval hindgut12 24 of 4 0.26Down
Larval fat body13 32 of 4 0.30Down
Larval trachea21 24 of 4 0.44Down
Larval carcass14 14 of 4 0.30Down
S2 cells (growing)76 44 of 4 1.54Up
Whole fly49 24 of 4

Looking for FBgn0031070. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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