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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0031080 through 18771 annotations produced 1 hits


Annotation Number : CG12655
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031080
Gbrowse : chrX:19852532-19853028 (-) // 100.0 //
Probeset : 1629443_at
Accessions : protein= NP_608364;, nucleotide= NM_134520;
FlyMine data for FBgn0031080.
BioGrid reports that CG12655 interacts with CG17233 CG31550 .
VDRC has 2 RNAi stocks for FBgn0031080 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 10 of 4 0.60Down
Head35 44 of 4 2.50Up
Eye41 54 of 4 2.93Up
Thoracicoabdominal ganglion9 10 of 4 0.60None
Salivary gland14 40 of 4 0.98None
Crop1 00 of 4 0.10Down
Midgut2 00 of 4 0.20Down
Tubule1 00 of 4 0.10Down
Hindgut222 184 of 415.60Up
Heart6 20 of 4 0.44Down
Fat body2 10 of 4 0.17Down
Ovary5 10 of 4 0.40Down
Testis14 30 of 4 1.00None
Male accessory glands1 00 of 4 0.10Down
Virgin spermatheca5 30 of 4 0.36None
Mated spermatheca6 20 of 4 0.48Down
Adult carcass32 41 of 4 2.30Up
Larval CNS7 20 of 4 0.53Down
Larval Salivary gland14 12 of 4 1.02None
Larval midgut5 10 of 4 0.36Down
Larval tubule3 10 of 4 0.20Down
Larval hindgut180 94 of 412.66Up
Larval fat body2 00 of 4 0.20Down
Larval trachea18 62 of 4 1.33None
Larval carcass81 173 of 4 5.70Up
S2 cells (growing)1 00 of 4 0.11Down
Whole fly14 10 of 4

Looking for FBgn0031080. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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