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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031082 through 18771 annotations produced 1 hits



(CG17003):

Annotation Number : CG17003
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031082
Gbrowse : chrX:19894999-19896129 (-) // 100.0 //
Probeset : 1632703_at
Accessions : protein= NP_608365;, nucleotide= NM_134521;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0031082.
BioGrid reports that CG17003 interacts with CG5447 CG5445 .
VDRC has 3 RNAi stocks for FBgn0031082 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.10Down
Head2 00 of 4 0.10Down
Eye3 10 of 4 0.14Down
Thoracicoabdominal ganglion0 00 of 4 0.00Down
Salivary gland8 20 of 4 0.31Down
Crop2 10 of 4 0.10Down
Midgut4 10 of 4 0.20Down
Tubule1 00 of 4 0.10Down
Hindgut0 00 of 4 0.00Down
Heart1 00 of 4 0.05Down
Fat body2 10 of 4 0.09Down
Ovary1 00 of 4 0.10Down
Testis300 154 of 410.60Up
Male accessory glands1 00 of 4 0.00Down
Virgin spermatheca0 00 of 4 0.02Down
Mated spermatheca1 00 of 4 0.05Down
Adult carcass1 00 of 4 0.10Down
Larval CNS1 00 of 4 0.04Down
Larval Salivary gland5 10 of 4 0.19Down
Larval midgut5 20 of 4 0.19Down
Larval tubule1 10 of 4 0.10Down
Larval hindgut3 10 of 4 0.11Down
Larval fat body28 113 of 4 1.00None
Larval trachea4 31 of 4 0.16Down
Larval carcass2 00 of 4 0.07Down
S2 cells (growing)0 00 of 4 0.03Down
Whole fly28 22 of 4

Looking for FBgn0031082. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime