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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031085 through 18771 annotations produced 1 hits



(CG9570):

Annotation Number : CG9570
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031085
Gbrowse : chrX:19945326-19946555 (+) // 100.0 //
Probeset : 1624678_at
Accessions : protein= NP_608368;, nucleotide= NM_134524;
FlyMine data for FBgn0031085.
BDGP gene expression has embryonic in situ data for CG9570: 2 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0031085 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head2 ± 10 of 4 0.00Down
Eye3 ± 10 of 4 0.04Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland3 ± 10 of 4 0.04Down
Crop1 ± 00 of 4 0.00Down
Midgut4 ± 20 of 4 0.10Down
Tubule2 ± 00 of 4 0.00Down
Hindgut2 ± 00 of 4 0.00Down
Heart1 ± 00 of 4 0.02Down
Fat body2 ± 20 of 4 0.03Down
Ovary1 ± 00 of 4 0.00Down
Testis1109 ± 184 of 414.20Up
Male accessory glands3 ± 20 of 4 0.00Down
Virgin spermatheca1 ± 00 of 4 0.02Down
Mated spermatheca2 ± 10 of 4 0.03Down
Adult carcass3 ± 10 of 4 0.00Down
Larval CNS1 ± 00 of 4 0.01Down
Larval Salivary gland3 ± 10 of 4 0.05Down
Larval midgut3 ± 20 of 4 0.04Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut2 ± 10 of 4 0.03Down
Larval fat body70 ± 373 of 4 0.90None
Larval trachea3 ± 40 of 4 0.05Down
Larval carcass3 ± 10 of 4 0.04Down
S2 cells (growing)1 ± 00 of 4 0.02Down
Whole fly78 ± 74 of 4

Looking for FBgn0031085. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime