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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031088 through 18771 annotations produced 1 hits



(CG15322):

Annotation Number : CG15322
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031088
Gbrowse : chrX:20029028-20032405 (+) // 100.0 //
Probeset : 1635748_at
Accessions : protein= NP_608371;, nucleotide= NM_134527;
FlyMine data for FBgn0031088.
VDRC has 3 RNAi stocks for FBgn0031088 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 1.00None
Head3 ± 20 of 4 1.00None
Eye2 ± 10 of 4 0.82None
Thoracicoabdominal ganglion4 ± 10 of 4 1.10None
Salivary gland12 ± 00 of 4 3.48Up
Crop3 ± 10 of 4 1.00None
Midgut4 ± 10 of 4 1.20None
Tubule2 ± 00 of 4 0.80None
Hindgut6 ± 31 of 4 1.80None
Heart1 ± 00 of 4 0.45None
Fat body7 ± 50 of 4 2.15None
Ovary2 ± 00 of 4 0.60None
Testis0 ± 00 of 4 0.20None
Male accessory glands14 ± 41 of 4 4.20None
Virgin spermatheca5 ± 20 of 4 1.54None
Mated spermatheca4 ± 20 of 4 1.38None
Adult carcass14 ± 20 of 4 4.20Up
Larval CNS4 ± 20 of 4 1.36None
Larval Salivary gland7 ± 30 of 4 2.14None
Larval midgut2 ± 00 of 4 0.62None
Larval tubule2 ± 00 of 4 0.70None
Larval hindgut3 ± 00 of 4 0.96None
Larval fat body1 ± 00 of 4 0.50None
Larval trachea4 ± 30 of 4 1.15None
Larval carcass6 ± 30 of 4 1.74None
S2 cells (growing)7 ± 20 of 4 2.19None
Whole fly3 ± 10 of 4

Looking for FBgn0031088. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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