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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0031090 through 18771 annotations produced 1 hits

Rab35 (Rab35):

Annotation Number : CG9575
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031090
Gbrowse : chrX:20050507-20053871 (-) // 100.0 //
Probeset : 1624567_at
Accessions : protein= NP_608373;, nucleotide= NM_134529;
Pathway : engulfment // inferred from mutant phenotype /// 0007264 // small GTPase mediated signal transduction // inferred from
Interpro : 0005811 // lipid particle // inferred from direct assay
FlyMine data for FBgn0031090.
BDGP gene expression has embryonic in situ data for CG9575: 4 pix of staining in 1 body parts.
Homophila reports that CG9575 is a close match (2e-12) to human gene HRAS (NP_789765), a gene associated with Costello syndrome, 218040 (3);{Bladder cancer, somatic}, 109800 (3);{Thyroid carcinoma, follicular, somatic}, 188470 (3).
TRiP has 1 RNAi stocks for FBgn0031090 available for purchase.
VDRC has 1 RNAi stocks for FBgn0031090 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain188 64 of 410.00Up
Head76 74 of 4 4.00Up
Eye72 34 of 4 3.83Up
Thoracicoabdominal ganglion178 114 of 4 9.40Up
Salivary gland60 64 of 4 3.20Up
Crop46 54 of 4 2.50Up
Midgut18 24 of 4 1.00None
Tubule24 13 of 4 1.30Up
Hindgut30 24 of 4 1.60Up
Heart41 54 of 4 2.19Up
Fat body44 64 of 4 2.33Up
Ovary13 04 of 4 0.70Down
Testis9 14 of 4 0.50Down
Male accessory glands27 24 of 4 1.50None
Virgin spermatheca63 64 of 4 3.35Up
Mated spermatheca51 34 of 4 2.71Up
Adult carcass30 14 of 4 1.60Up
Larval CNS235 34 of 412.45Up
Larval Salivary gland45 24 of 4 2.41Up
Larval midgut28 14 of 4 1.50Up
Larval tubule32 24 of 4 1.70Up
Larval hindgut32 34 of 4 1.73Up
Larval fat body50 54 of 4 2.70Up
Larval trachea53 114 of 4 2.80Up
Larval carcass40 14 of 4 2.15Up
S2 cells (growing)86 24 of 4 4.57Up
Whole fly19 14 of 4

Looking for FBgn0031090. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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