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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031094 through 18771 annotations produced 1 hits



(CG9578):

Annotation Number : CG9578
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031094
Gbrowse : chrX:20064274-20065562 (+) // 100.0 //
Probeset : 1631088_at
Accessions : protein= NP_608377;, nucleotide= NM_134533;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0031094.
BDGP gene expression has embryonic in situ data for CG9578: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0031094 available for purchase.
VDRC has 3 RNAi stocks for FBgn0031094 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain169 24 of 4 1.00None
Head129 84 of 4 0.70Down
Eye212 44 of 4 1.21Up
Thoracicoabdominal ganglion199 84 of 4 1.10None
Salivary gland164 84 of 4 0.94None
Crop163 54 of 4 0.90None
Midgut110 54 of 4 0.60Down
Tubule132 74 of 4 0.80Down
Hindgut139 24 of 4 0.80Down
Heart123 34 of 4 0.71Down
Fat body78 104 of 4 0.45Down
Ovary286 64 of 4 1.60Up
Testis175 74 of 4 1.00None
Male accessory glands208 94 of 4 1.20Up
Virgin spermatheca74 64 of 4 0.42Down
Mated spermatheca94 54 of 4 0.54Down
Adult carcass99 24 of 4 0.60Down
Larval CNS271 74 of 4 1.55Up
Larval Salivary gland169 34 of 4 0.97None
Larval midgut97 34 of 4 0.56Down
Larval tubule222 54 of 4 1.30Up
Larval hindgut126 34 of 4 0.72Down
Larval fat body138 44 of 4 0.80Down
Larval trachea234 84 of 4 1.34Up
Larval carcass152 44 of 4 0.87None
S2 cells (growing)90 14 of 4 0.52Down
Whole fly175 74 of 4

Looking for FBgn0031094. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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