FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0031097 through 18771 annotations produced 1 hits

CG17052 (obst-A):

Annotation Number : CG17052
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031097
Gbrowse : chrX:20110933-20114254 (+) // 100.0 //
Probeset : 1640107_at
Accessions : protein= NP_608378;, nucleotide= NM_134534;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0008061 // chitin binding // inferred from electronic annotation /// 0008061 // chitin binding // inferred from reviewed
FlyMine data for FBgn0031097.
BDGP gene expression has embryonic in situ data for CG17052: 45 pix of staining in 7 body parts.
VDRC has 3 RNAi stocks for FBgn0031097 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	9 ± 1	3 of 4	0.40	Down
Head	50 ± 5	4 of 4	2.10	Up
Eye	22 ± 6	4 of 4	0.91	None
Thoracicoabdominal ganglion	10 ± 2	2 of 4	0.40	Down
Salivary gland	5 ± 3	0 of 4	0.22	Down
Crop	4 ± 0	0 of 4	0.20	Down
Midgut	5 ± 1	0 of 4	0.20	Down
Tubule	3 ± 0	0 of 4	0.10	Down
Hindgut	14 ± 2	3 of 4	0.60	Down
Heart	6 ± 2	2 of 4	0.26	Down
Fat body	15 ± 7	1 of 4	0.64	None
Ovary	1 ± 0	0 of 4	0.10	Down
Testis	0 ± 0	0 of 4	0.00	Down
Male accessory glands	13 ± 3	0 of 4	0.50	Down
Virgin spermatheca	5 ± 1	2 of 4	0.24	Down
Mated spermatheca	10 ± 1	3 of 4	0.43	Down
Adult carcass	136 ± 14	4 of 4	5.60	Up
Larval CNS	25 ± 6	4 of 4	1.03	None
Larval Salivary gland	9 ± 5	1 of 4	0.40	None
Larval midgut	10 ± 1	3 of 4	0.44	Down
Larval tubule	1 ± 1	0 of 4	0.10	Down
Larval hindgut	462 ± 86	4 of 4	18.92	Up
Larval fat body	26 ± 5	4 of 4	1.10	None
Larval trachea	1972 ± 186	4 of 4	80.76	Up
Larval carcass	3251 ± 269	4 of 4	133.12	Up
S2 cells (growing)	5 ± 1	1 of 4	0.21	Down
Whole fly	24 ± 1	4 of 4

Looking for FBgn0031097. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720