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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031099 through 18771 annotations produced 1 hits



(CG17065):

Annotation Number : CG17065
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031099
Gbrowse : chrX:20125716-20128157 (-) // 100.0 //
Probeset : 1638247_at
Accessions : protein= NP_001162805; /// NP_608380;, nucleotide= NM_001169334; /// NM_134536;
Interpro : "0008448 // N-acetylglucosamine-6-phosphate deacetylase activity // inferred from sequence or structural similarity ///
FlyMine data for FBgn0031099.
BDGP gene expression has embryonic in situ data for CG17065: 15 pix of staining in 5 body parts.
VDRC has 3 RNAi stocks for FBgn0031099 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain405 94 of 4 6.40Up
Head132 154 of 4 2.10Up
Eye422 474 of 4 6.63Up
Thoracicoabdominal ganglion263 44 of 4 4.10Up
Salivary gland100 44 of 4 1.57Up
Crop72 54 of 4 1.10None
Midgut80 54 of 4 1.30None
Tubule167 34 of 4 2.60Up
Hindgut88 44 of 4 1.40Up
Heart110 64 of 4 1.73Up
Fat body71 154 of 4 1.13None
Ovary39 24 of 4 0.60None
Testis76 34 of 4 1.20None
Male accessory glands104 94 of 4 1.60Up
Virgin spermatheca74 44 of 4 1.16None
Mated spermatheca86 14 of 4 1.35None
Adult carcass81 24 of 4 1.30None
Larval CNS143 154 of 4 2.25Up
Larval Salivary gland117 94 of 4 1.85Up
Larval midgut192 184 of 4 3.02Up
Larval tubule235 124 of 4 3.70Up
Larval hindgut96 94 of 4 1.51Up
Larval fat body68 64 of 4 1.10None
Larval trachea167 194 of 4 2.62Up
Larval carcass116 54 of 4 1.83Up
S2 cells (growing)15 14 of 4 0.24Down
Whole fly63 84 of 4

Looking for FBgn0031099. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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