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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0031100 through 18771 annotations produced 1 hits


Annotation Number : CG1504
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031100
Gbrowse : chrX:20181335-20182700 (-) // 100.0 //
Probeset : 1629564_at
Accessions : protein= NP_608382;, nucleotide= NM_134538;
FlyMine data for FBgn0031100.
Homophila reports that CG1504 is a close match (5e-12) to human gene NOGOR;RTN4R (NP_075380), a gene associated with {Schizophrenia, susceptibility to}, 181500 (3).
BioGrid reports that CG1504 interacts with CG7135 .
TRiP has 1 RNAi stocks for FBgn0031100 available for purchase.
VDRC has 2 RNAi stocks for FBgn0031100 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain15 32 of 417.90Up
Head3 00 of 4 3.60None
Eye1 00 of 4 2.32None
Thoracicoabdominal ganglion15 21 of 418.60Up
Salivary gland2 10 of 4 2.68None
Crop0 00 of 4 0.70None
Midgut0 00 of 4 1.00None
Tubule1 00 of 4 2.10Up
Hindgut0 00 of 4 0.80None
Heart2 10 of 4 2.71None
Fat body1 00 of 4 2.00Up
Ovary1 00 of 4 1.10None
Testis0 00 of 4 0.80None
Male accessory glands1 00 of 4 2.10None
Virgin spermatheca1 00 of 4 1.21None
Mated spermatheca1 00 of 4 2.09None
Adult carcass1 00 of 4 2.00Up
Larval CNS2 10 of 4 2.68None
Larval Salivary gland1 00 of 4 1.94None
Larval midgut1 00 of 4 1.76None
Larval tubule1 00 of 4 1.60None
Larval hindgut0 00 of 4 1.00None
Larval fat body4 20 of 4 5.50None
Larval trachea0 00 of 4 0.85None
Larval carcass1 00 of 4 1.65None
S2 cells (growing)1 00 of 4 1.53None
Whole fly0 00 of 4

Looking for FBgn0031100. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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