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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031107 through 18771 annotations produced 1 hits



HERC2 (HERC2):

Annotation Number : CG11734
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031107
Gbrowse : chrX:20265504-20283275 (+) // 100.0 //
Probeset : 1629145_at
Accessions : protein= NP_608388;, nucleotide= NM_134544;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005680 // anaphase-promoting complex // inferred fr
Interpro : 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0004842 // ubiquitin-protein lig
FlyMine data for FBgn0031107.
Homophila reports that CG11734 is a close match (3e-13) to human gene CUL7 (NP_055595), a gene associated with 3-M syndrome, 273750 (3).
VDRC has 4 RNAi stocks for FBgn0031107 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain355 124 of 4 5.00Up
Head123 54 of 4 1.70Up
Eye126 124 of 4 1.80Up
Thoracicoabdominal ganglion270 44 of 4 3.80Up
Salivary gland81 54 of 4 1.16None
Crop62 24 of 4 0.90None
Midgut58 33 of 4 0.80None
Tubule58 14 of 4 0.80Down
Hindgut71 24 of 4 1.00None
Heart70 44 of 4 1.00None
Fat body120 94 of 4 1.71Up
Ovary137 24 of 4 2.00Up
Testis46 14 of 4 0.70Down
Male accessory glands73 64 of 4 1.00None
Virgin spermatheca64 14 of 4 0.91None
Mated spermatheca62 34 of 4 0.88None
Adult carcass82 94 of 4 1.20None
Larval CNS279 344 of 4 3.97Up
Larval Salivary gland90 44 of 4 1.29Up
Larval midgut82 44 of 4 1.17None
Larval tubule93 14 of 4 1.30Up
Larval hindgut103 34 of 4 1.47Up
Larval fat body64 34 of 4 0.90None
Larval trachea87 94 of 4 1.24Up
Larval carcass74 44 of 4 1.06None
S2 cells (growing)117 14 of 4 1.67Up
Whole fly70 34 of 4

Looking for FBgn0031107. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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