FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0031109 through 18771 annotations produced 2 hits

():

Annotation Number : CG11748
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chrX:20286756-20287436 (+) // 100.0 //
Probeset : 1623636_at
Accessions : protein= NP_728338;, nucleotide= NM_167700;
Pathway : 0005576 // extracellular region // inferred from sequence or structural similarity
Interpro : 0005549 // odorant binding // not recorded /// 0005549 // odorant binding // inferred from sequence or structural simila

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	3 ± 1	0 of 4	0.00	Down
Head	1800 ± 118	4 of 4	14.30	Up
Eye	251 ± 116	4 of 4	1.99	None
Thoracicoabdominal ganglion	1 ± 0	0 of 4	0.00	Down
Salivary gland	4 ± 2	0 of 4	0.03	Down
Crop	0 ± 0	0 of 4	0.00	Down
Midgut	4 ± 1	0 of 4	0.00	Down
Tubule	2 ± 0	0 of 4	0.00	Down
Hindgut	1 ± 0	0 of 4	0.00	Down
Heart	0 ± 0	0 of 4	0.01	Down
Fat body	2 ± 2	0 of 4	0.02	Down
Ovary	0 ± 0	0 of 4	0.00	Down
Testis	0 ± 0	0 of 4	0.00	Down
Male accessory glands	4 ± 2	0 of 4	0.00	Down
Virgin spermatheca	1 ± 0	0 of 4	0.01	Down
Mated spermatheca	1 ± 0	0 of 4	0.01	Down
Adult carcass	5 ± 1	0 of 4	0.00	Down
Larval CNS	0 ± 0	0 of 4	0.01	Down
Larval Salivary gland	1 ± 0	0 of 4	0.01	Down
Larval midgut	6 ± 2	0 of 4	0.05	Down
Larval tubule	4 ± 0	0 of 4	0.00	Down
Larval hindgut	0 ± 0	0 of 4	0.01	Down
Larval fat body	0 ± 0	0 of 4	0.00	Down
Larval trachea	5 ± 7	1 of 4	0.04	Down
Larval carcass	3 ± 1	0 of 4	0.02	Down
S2 cells (growing)	0 ± 0	0 of 4	0.01	Down
Whole fly	126 ± 7	4 of 4

Odorant-binding protein 19a (Obp19a):

Annotation Number : CG11748
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031109
Gbrowse : chrX:20286756-20287371 (+) // 100.0 //
Probeset : 1637454_a_at
Accessions : protein= NP_728338;, nucleotide= NM_167700;
Pathway : 0005576 // extracellular region // inferred from sequence or structural similarity /// 0005576 // extracellular region /
Interpro : 0005549 // odorant binding // not recorded /// 0005549 // odorant binding // inferred from sequence or structural simila
FlyMine data for FBgn0031109.
VDRC has 1 RNAi stocks for FBgn0031109 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1 ± 0	0 of 4	0.00	Down
Head	1079 ± 135	4 of 4	17.40	Up
Eye	157 ± 75	4 of 4	2.54	None
Thoracicoabdominal ganglion	6 ± 0	0 of 4	0.10	Down
Salivary gland	15 ± 4	0 of 4	0.24	Down
Crop	7 ± 1	0 of 4	0.10	Down
Midgut	4 ± 0	0 of 4	0.10	Down
Tubule	7 ± 1	0 of 4	0.10	Down
Hindgut	3 ± 1	0 of 4	0.10	Down
Heart	1 ± 0	0 of 4	0.02	Down
Fat body	1 ± 0	0 of 4	0.03	Down
Ovary	6 ± 1	0 of 4	0.10	Down
Testis	1 ± 0	0 of 4	0.00	Down
Male accessory glands	5 ± 2	0 of 4	0.10	Down
Virgin spermatheca	7 ± 2	0 of 4	0.13	Down
Mated spermatheca	3 ± 1	0 of 4	0.05	Down
Adult carcass	7 ± 1	0 of 4	0.10	Down
Larval CNS	2 ± 1	0 of 4	0.03	Down
Larval Salivary gland	7 ± 2	0 of 4	0.12	Down
Larval midgut	8 ± 0	0 of 4	0.14	Down
Larval tubule	3 ± 1	0 of 4	0.10	Down
Larval hindgut	2 ± 1	0 of 4	0.04	Down
Larval fat body	3 ± 1	0 of 4	0.10	Down
Larval trachea	2 ± 4	0 of 4	0.05	Down
Larval carcass	11 ± 3	0 of 4	0.18	Down
S2 cells (growing)	5 ± 1	0 of 4	0.09	Down
Whole fly	62 ± 7	4 of 4

Looking for FBgn0031109. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720