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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031111 through 18771 annotations produced 2 hits



Odorant-binding protein 19c (Obp19c):

Annotation Number : CG15457
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031111
Gbrowse : chrX:20289198-20289792 (-) // 100.0 //
Probeset : 1626467_a_at
Accessions : protein= NP_608392;, nucleotide= NM_134548;
Interpro : 0005549 // odorant binding // not recorded /// 0005549 // odorant binding // inferred from sequence or structural simila
FlyMine data for FBgn0031111.
VDRC has 3 RNAi stocks for FBgn0031111 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.00Down
Head29 ± 44 of 4 0.20Down
Eye178 ± 154 of 4 1.20None
Thoracicoabdominal ganglion5 ± 21 of 4 0.00Down
Salivary gland9 ± 60 of 4 0.06Down
Crop2 ± 00 of 4 0.00Down
Midgut0 ± 00 of 4 0.00Down
Tubule3 ± 00 of 4 0.00Down
Hindgut3 ± 10 of 4 0.00Down
Heart2 ± 00 of 4 0.02Down
Fat body4 ± 50 of 4 0.03Down
Ovary199 ± 244 of 4 1.30None
Testis1 ± 00 of 4 0.00Down
Male accessory glands5 ± 20 of 4 0.00Down
Virgin spermatheca2 ± 10 of 4 0.02Down
Mated spermatheca2 ± 10 of 4 0.02Down
Adult carcass17 ± 61 of 4 0.10Down
Larval CNS1 ± 00 of 4 0.01Down
Larval Salivary gland4 ± 10 of 4 0.03Down
Larval midgut0 ± 00 of 4 0.00Down
Larval tubule2 ± 10 of 4 0.00Down
Larval hindgut1 ± 00 of 4 0.01Down
Larval fat body7 ± 20 of 4 0.00Down
Larval trachea2 ± 40 of 4 0.02Down
Larval carcass1 ± 00 of 4 0.01Down
S2 cells (growing)0 ± 00 of 4 0.01Down
Whole fly149 ± 354 of 4



():

Annotation Number : CG15457
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chrX:20289198-20289792 (-) // 100.0 //
Probeset : 1630155_at
Accessions : protein= NP_608392;, nucleotide= NM_134548;
Interpro : 0005549 // odorant binding // not recorded /// 0005549 // odorant binding // inferred from sequence or structural simila


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.40None
Head2 ± 00 of 4 0.30None
Eye3 ± 10 of 4 0.59None
Thoracicoabdominal ganglion3 ± 10 of 4 0.60None
Salivary gland7 ± 40 of 4 1.18None
Crop5 ± 20 of 4 0.80None
Midgut5 ± 00 of 4 0.90None
Tubule3 ± 00 of 4 0.60Down
Hindgut3 ± 10 of 4 0.50None
Heart2 ± 00 of 4 0.38None
Fat body2 ± 30 of 4 0.44None
Ovary7 ± 11 of 4 1.10None
Testis1 ± 00 of 4 0.30None
Male accessory glands5 ± 20 of 4 0.80None
Virgin spermatheca5 ± 10 of 4 0.89None
Mated spermatheca8 ± 10 of 4 1.24None
Adult carcass4 ± 10 of 4 0.70None
Larval CNS2 ± 20 of 4 0.33None
Larval Salivary gland2 ± 00 of 4 0.37None
Larval midgut8 ± 10 of 4 1.33None
Larval tubule2 ± 00 of 4 0.30None
Larval hindgut2 ± 00 of 4 0.41None
Larval fat body4 ± 10 of 4 0.70None
Larval trachea3 ± 10 of 4 0.56None
Larval carcass3 ± 10 of 4 0.58None
S2 cells (growing)3 ± 00 of 4 0.53None
Whole fly6 ± 20 of 4

Looking for FBgn0031111. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime