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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031115 through 18771 annotations produced 1 hits



(CG11710):

Annotation Number : CG11710
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031115
Gbrowse : chrX:20298552-20300626 (-) // 100.0 //
Probeset : 1640187_a_at
Accessions : protein= NP_608393; /// NP_728344;, nucleotide= NM_134549; /// NM_167704;
Pathway : 0005634 // nucleus // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electr
FlyMine data for FBgn0031115.
BDGP gene expression has embryonic in situ data for CG11710: 4 pix of staining in 1 body parts.
BioGrid reports that CG11710 interacts with CG15658 .
VDRC has 1 RNAi stocks for FBgn0031115 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain141 ± 34 of 4 1.40Up
Head89 ± 74 of 4 0.90None
Eye81 ± 44 of 4 0.78None
Thoracicoabdominal ganglion143 ± 64 of 4 1.40Up
Salivary gland115 ± 94 of 4 1.10None
Crop83 ± 24 of 4 0.80None
Midgut108 ± 64 of 4 1.00None
Tubule127 ± 124 of 4 1.20None
Hindgut69 ± 44 of 4 0.70Down
Heart76 ± 44 of 4 0.73None
Fat body97 ± 124 of 4 0.93None
Ovary149 ± 54 of 4 1.40Up
Testis93 ± 24 of 4 0.90None
Male accessory glands88 ± 44 of 4 0.80None
Virgin spermatheca76 ± 34 of 4 0.73None
Mated spermatheca87 ± 34 of 4 0.84None
Adult carcass75 ± 34 of 4 0.70None
Larval CNS106 ± 54 of 4 1.02None
Larval Salivary gland150 ± 64 of 4 1.44Up
Larval midgut84 ± 54 of 4 0.81None
Larval tubule124 ± 54 of 4 1.20None
Larval hindgut64 ± 44 of 4 0.62Down
Larval fat body96 ± 34 of 4 0.90None
Larval trachea93 ± 104 of 4 0.90None
Larval carcass85 ± 34 of 4 0.82None
S2 cells (growing)204 ± 34 of 4 1.95Up
Whole fly104 ± 104 of 4

Looking for FBgn0031115. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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