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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031126 through 18771 annotations produced 1 hits



Cyp6v1 (Cyp6v1):

Annotation Number : CG1829
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031126
Gbrowse : chrX:20528810-20532280 (+) // 100.0 //
Probeset : 1633354_at
Accessions : protein= NP_608403;, nucleotide= NM_134559;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane //
Interpro : 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred fro
FlyMine data for FBgn0031126.
Homophila reports that CG1829 is a close match (6e-11) to human gene ARO;CYP19;CYP19A1 (NP_112503), a gene associated with Aromatase deficiency (3);Aromatase excess syndrome, 139300 (3);Pseudohermaphroditism, female, due to placental aromatase deficiency (3).
BioGrid reports that CG1829 interacts with CG6684 .
VDRC has 3 RNAi stocks for FBgn0031126 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 12 of 4 0.10Down
Head50 ± 34 of 4 0.50Down
Eye37 ± 24 of 4 0.36Down
Thoracicoabdominal ganglion12 ± 13 of 4 0.10Down
Salivary gland53 ± 54 of 4 0.51Down
Crop257 ± 94 of 4 2.50Up
Midgut90 ± 14 of 4 0.90None
Tubule40 ± 24 of 4 0.40Down
Hindgut88 ± 44 of 4 0.80None
Heart53 ± 14 of 4 0.51Down
Fat body68 ± 74 of 4 0.65Down
Ovary236 ± 44 of 4 2.30Up
Testis10 ± 03 of 4 0.10Down
Male accessory glands63 ± 54 of 4 0.60Down
Virgin spermatheca107 ± 84 of 4 1.02None
Mated spermatheca59 ± 44 of 4 0.57Down
Adult carcass77 ± 64 of 4 0.70Down
Larval CNS15 ± 14 of 4 0.15Down
Larval Salivary gland39 ± 44 of 4 0.38Down
Larval midgut68 ± 64 of 4 0.65Down
Larval tubule117 ± 64 of 4 1.10None
Larval hindgut45 ± 34 of 4 0.43Down
Larval fat body175 ± 164 of 4 1.70Up
Larval trachea31 ± 54 of 4 0.30Down
Larval carcass41 ± 54 of 4 0.40Down
S2 cells (growing)16 ± 14 of 4 0.16Down
Whole fly104 ± 54 of 4

Looking for FBgn0031126. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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