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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031134 through 18771 annotations produced 1 hits



(CG1314):

Annotation Number : CG1314
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031134
Gbrowse : chrX:20739015-20740424 (-) // 100.0 //
Probeset : 1630685_at
Accessions : protein= NP_608411;, nucleotide= NM_134567;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0031134.
BioGrid reports that CG1314 interacts with CG15576 CG15631 CG2998 CG3731 CG3929 CG6770 CG33344 .
VDRC has 1 RNAi stocks for FBgn0031134 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 ± 03 of 4 0.30Down
Head1 ± 00 of 4 0.00Down
Eye1 ± 00 of 4 0.04Down
Thoracicoabdominal ganglion7 ± 10 of 4 0.20Down
Salivary gland2 ± 10 of 4 0.06Down
Crop2 ± 10 of 4 0.10Down
Midgut1 ± 10 of 4 0.00Down
Tubule2 ± 00 of 4 0.00Down
Hindgut1 ± 00 of 4 0.00Down
Heart3 ± 10 of 4 0.08Down
Fat body4 ± 40 of 4 0.10Down
Ovary0 ± 00 of 4 0.00Down
Testis673 ± 44 of 415.50Up
Male accessory glands0 ± 00 of 4 0.00Down
Virgin spermatheca1 ± 00 of 4 0.04Down
Mated spermatheca3 ± 00 of 4 0.08Down
Adult carcass6 ± 20 of 4 0.10Down
Larval CNS1 ± 10 of 4 0.03Down
Larval Salivary gland0 ± 00 of 4 0.01Down
Larval midgut0 ± 00 of 4 0.02Down
Larval tubule0 ± 00 of 4 0.00Down
Larval hindgut0 ± 00 of 4 0.01Down
Larval fat body70 ± 372 of 4 1.60None
Larval trachea1 ± 30 of 4 0.04Down
Larval carcass1 ± 00 of 4 0.02Down
S2 cells (growing)0 ± 00 of 4 0.01Down
Whole fly43 ± 54 of 4

Looking for FBgn0031134. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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