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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031135 through 18771 annotations produced 1 hits



(CR11235):

Annotation Number : CG11235
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031135
Gbrowse : chrX:20743344-20746369 (+) // 100.0 //
Probeset : 1639711_at
Accessions : protein= NP_608412;, nucleotide= NM_134568;
FlyMine data for FBgn0031135.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.30None
Head0 00 of 4 0.30None
Eye1 00 of 4 1.01None
Thoracicoabdominal ganglion0 00 of 4 0.50None
Salivary gland10 70 of 4 5.53None
Crop0 00 of 4 0.50None
Midgut2 00 of 4 1.40None
Tubule1 00 of 4 0.90None
Hindgut1 00 of 4 0.70None
Heart2 00 of 4 1.11None
Fat body4 20 of 4 2.46None
Ovary0 00 of 4 0.30None
Testis1 00 of 4 0.60None
Male accessory glands2 00 of 4 1.10None
Virgin spermatheca2 10 of 4 1.39None
Mated spermatheca0 00 of 4 0.45None
Adult carcass1 00 of 4 0.80None
Larval CNS1 00 of 4 0.57None
Larval Salivary gland2 00 of 4 1.43None
Larval midgut2 00 of 4 1.15None
Larval tubule0 00 of 4 0.40None
Larval hindgut0 00 of 4 0.19None
Larval fat body1 00 of 4 1.00None
Larval trachea1 10 of 4 0.99None
Larval carcass2 00 of 4 1.53None
S2 cells (growing)1 00 of 4 0.57None
Whole fly1 00 of 4

Looking for FBgn0031135. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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