FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0031139 through 18771 annotations produced 3 hits

/// (CG11227 /// CG13630):

Annotation Number : CG13630
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039219
Gbrowse : chr3R:20543656-20545084 (-) // 100.0 //
Probeset : 1625968_at
Accessions : protein= NP_651281;, nucleotide= NM_143024;
Interpro : 0004177 // aminopeptidase activity // inferred from sequence or structural similarity /// 0004177 // aminopeptidase acti
FlyMine data for FBgn0039219.
BioGrid reports that CG13630 interacts with CG14534 CG18497 CG30497 CG4303 CG8907 CG9902 .
VDRC has 1 RNAi stocks for FBgn0039219 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	112 ± 3	4 of 4	0.50	Down
Head	204 ± 7	4 of 4	0.90	None
Eye	291 ± 6	4 of 4	1.29	Up
Thoracicoabdominal ganglion	152 ± 4	4 of 4	0.70	Down
Salivary gland	104 ± 4	4 of 4	0.46	Down
Crop	184 ± 3	4 of 4	0.80	Down
Midgut	211 ± 10	4 of 4	0.90	None
Tubule	221 ± 2	4 of 4	1.00	Down
Hindgut	215 ± 2	4 of 4	1.00	None
Heart	231 ± 8	4 of 4	1.03	None
Fat body	210 ± 14	4 of 4	0.93	None
Ovary	297 ± 6	4 of 4	1.30	Up
Testis	205 ± 5	4 of 4	0.90	None
Male accessory glands	192 ± 4	4 of 4	0.90	None
Virgin spermatheca	330 ± 38	4 of 4	1.46	None
Mated spermatheca	293 ± 25	4 of 4	1.30	None
Adult carcass	203 ± 8	4 of 4	0.90	None
Larval CNS	305 ± 9	4 of 4	1.35	Up
Larval Salivary gland	166 ± 6	4 of 4	0.74	Down
Larval midgut	186 ± 6	4 of 4	0.82	Down
Larval tubule	272 ± 5	4 of 4	1.20	Up
Larval hindgut	250 ± 1	4 of 4	1.11	None
Larval fat body	190 ± 2	4 of 4	0.80	Down
Larval trachea	300 ± 15	4 of 4	1.33	Up
Larval carcass	218 ± 19	4 of 4	0.96	None
S2 cells (growing)	188 ± 3	4 of 4	0.83	Down
Whole fly	226 ± 11	4 of 4

(CG11227):

Annotation Number : CG11227
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031139
Gbrowse : chrX:20801860-20805109 (-) // 100.0 //
Probeset : 1626482_a_at
Accessions : protein= NP_608416; /// NP_728371; /// NP_728372;, nucleotide= NM_134572; /// NM_167718; /// NM_167719;
FlyMine data for FBgn0031139.
BDGP gene expression has embryonic in situ data for CG11227: 4 pix of staining in 1 body parts.
BioGrid reports that CG11227 interacts with CG5111 .
VDRC has 2 RNAi stocks for FBgn0031139 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1 ± 0	0 of 4	0.10	Down
Head	0 ± 0	0 of 4	0.10	Down
Eye	0 ± 0	0 of 4	0.05	Down
Thoracicoabdominal ganglion	1 ± 0	0 of 4	0.10	Down
Salivary gland	2 ± 0	0 of 4	0.20	None
Crop	2 ± 1	0 of 4	0.20	None
Midgut	3 ± 1	0 of 4	0.30	None
Tubule	1 ± 0	0 of 4	0.10	Down
Hindgut	0 ± 0	0 of 4	0.00	Down
Heart	0 ± 0	0 of 4	0.04	Down
Fat body	4 ± 2	0 of 4	0.38	None
Ovary	0 ± 0	0 of 4	0.10	Down
Testis	218 ± 3	4 of 4	19.10	Up
Male accessory glands	1 ± 0	0 of 4	0.10	Down
Virgin spermatheca	1 ± 0	0 of 4	0.14	Down
Mated spermatheca	1 ± 0	0 of 4	0.16	None
Adult carcass	1 ± 0	0 of 4	0.10	Down
Larval CNS	0 ± 0	0 of 4	0.08	Down
Larval Salivary gland	1 ± 0	0 of 4	0.09	Down
Larval midgut	1 ± 0	0 of 4	0.12	Down
Larval tubule	0 ± 0	0 of 4	0.10	Down
Larval hindgut	0 ± 0	0 of 4	0.03	Down
Larval fat body	15 ± 7	1 of 4	1.30	None
Larval trachea	0 ± 0	0 of 4	0.07	Down
Larval carcass	1 ± 0	0 of 4	0.13	Down
S2 cells (growing)	0 ± 0	0 of 4	0.07	Down
Whole fly	11 ± 3	1 of 4

(CG11227):

Annotation Number : CG11227
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031139
Gbrowse : chrX:20803678-20805109 (-) // 100.0 //
Probeset : 1623823_a_at
Accessions : protein= NP_608416; /// NP_728371; /// NP_728372;, nucleotide= NM_134572; /// NM_167718; /// NM_167719;
FlyMine data for FBgn0031139.
BDGP gene expression has embryonic in situ data for CG11227: 4 pix of staining in 1 body parts.
BioGrid reports that CG11227 interacts with CG5111 .
VDRC has 2 RNAi stocks for FBgn0031139 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	0 ± 0	0 of 4	0.10	Down
Head	1 ± 0	0 of 4	0.30	Down
Eye	1 ± 1	0 of 4	0.27	Down
Thoracicoabdominal ganglion	2 ± 1	0 of 4	0.40	None
Salivary gland	5 ± 1	0 of 4	1.05	None
Crop	1 ± 0	0 of 4	0.40	Down
Midgut	1 ± 0	0 of 4	0.30	Down
Tubule	3 ± 0	0 of 4	0.50	Down
Hindgut	0 ± 0	0 of 4	0.10	Down
Heart	1 ± 0	0 of 4	0.35	Down
Fat body	4 ± 0	0 of 4	0.79	None
Ovary	0 ± 0	0 of 4	0.10	Down
Testis	53 ± 3	4 of 4	9.80	Up
Male accessory glands	3 ± 1	0 of 4	0.70	None
Virgin spermatheca	4 ± 0	1 of 4	0.89	None
Mated spermatheca	3 ± 1	0 of 4	0.64	None
Adult carcass	3 ± 0	0 of 4	0.50	None
Larval CNS	1 ± 1	0 of 4	0.34	Down
Larval Salivary gland	3 ± 1	0 of 4	0.65	None
Larval midgut	2 ± 1	0 of 4	0.40	Down
Larval tubule	2 ± 1	0 of 4	0.50	None
Larval hindgut	2 ± 0	0 of 4	0.50	None
Larval fat body	6 ± 2	1 of 4	1.20	None
Larval trachea	2 ± 1	0 of 4	0.40	Down
Larval carcass	1 ± 0	0 of 4	0.25	Down
S2 cells (growing)	0 ± 0	0 of 4	0.14	Down
Whole fly	5 ± 0	1 of 4

Looking for FBgn0031139. 3 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720