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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031141 through 18771 annotations produced 1 hits



(CG1304):

Annotation Number : CG1304
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031141
Gbrowse : chrX:20835547-20836443 (-) // 100.0 //
Probeset : 1638264_at
Accessions : protein= NP_608418;, nucleotide= NM_134574;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0031141.
BDGP gene expression has embryonic in situ data for CG1304: 4 pix of staining in 1 body parts.
Homophila reports that CG1304 is a close match (1e-11) to human gene PC;PROC (NP_000303), a gene associated with Thrombophilia due to protein C deficiency, autosomal dominant, 176860 (3);Thrombophilia due to protein C deficiency, autosomal recessive, 612304 (3).
VDRC has 3 RNAi stocks for FBgn0031141 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 1.10None
Head3 ± 00 of 4 2.10None
Eye2 ± 10 of 4 1.61None
Thoracicoabdominal ganglion3 ± 10 of 4 2.00None
Salivary gland20 ± 41 of 413.38Up
Crop7 ± 01 of 4 4.70Up
Midgut4 ± 10 of 4 2.80None
Tubule4 ± 10 of 4 3.20Up
Hindgut4 ± 10 of 4 3.20Up
Heart5 ± 01 of 4 3.30Up
Fat body5 ± 20 of 4 3.87Up
Ovary1 ± 00 of 4 0.90None
Testis3 ± 10 of 4 2.30None
Male accessory glands8 ± 21 of 4 5.60Up
Virgin spermatheca6 ± 20 of 4 4.03None
Mated spermatheca3 ± 10 of 4 2.08None
Adult carcass7 ± 21 of 4 5.10None
Larval CNS3 ± 00 of 4 2.33Up
Larval Salivary gland4 ± 10 of 4 3.02Up
Larval midgut7 ± 20 of 4 5.16Up
Larval tubule5 ± 10 of 4 3.80None
Larval hindgut5 ± 11 of 4 3.69Up
Larval fat body4 ± 10 of 4 2.90None
Larval trachea2 ± 20 of 4 1.85None
Larval carcass8 ± 02 of 4 5.67Up
S2 cells (growing)2 ± 00 of 4 1.49None
Whole fly1 ± 00 of 4

Looking for FBgn0031141. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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