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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031143 through 18771 annotations produced 1 hits



(CG1532):

Annotation Number : CG1532
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031143
Gbrowse : chrX:20897314-20899373 (-) // 100.0 //
Probeset : 1623959_at
Accessions : protein= NP_608420;, nucleotide= NM_134576;
FlyMine data for FBgn0031143.
VDRC has 1 RNAi stocks for FBgn0031143 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain137 ± 24 of 4 0.40Down
Head247 ± 44 of 4 0.70Down
Eye163 ± 104 of 4 0.48Down
Thoracicoabdominal ganglion146 ± 54 of 4 0.40Down
Salivary gland208 ± 124 of 4 0.61Down
Crop343 ± 114 of 4 1.00None
Midgut1158 ± 304 of 4 3.40Up
Tubule1806 ± 1544 of 4 5.30Up
Hindgut471 ± 124 of 4 1.40Up
Heart249 ± 64 of 4 0.74Down
Fat body222 ± 114 of 4 0.66Down
Ovary382 ± 54 of 4 1.10None
Testis146 ± 34 of 4 0.40Down
Male accessory glands331 ± 224 of 4 1.00None
Virgin spermatheca309 ± 94 of 4 0.91None
Mated spermatheca344 ± 224 of 4 1.02None
Adult carcass233 ± 64 of 4 0.70Down
Larval CNS237 ± 154 of 4 0.70Down
Larval Salivary gland339 ± 64 of 4 1.00None
Larval midgut1451 ± 694 of 4 4.28Up
Larval tubule2277 ± 274 of 4 6.70Up
Larval hindgut534 ± 194 of 4 1.58Up
Larval fat body597 ± 614 of 4 1.80Up
Larval trachea439 ± 494 of 4 1.30Up
Larval carcass568 ± 484 of 4 1.68Up
S2 cells (growing)305 ± 44 of 4 0.90None
Whole fly339 ± 164 of 4

Looking for FBgn0031143. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime