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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031144 through 18771 annotations produced 1 hits



(CG1529):

Annotation Number : CG1529
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031144
Gbrowse : chrX:20899673-20902977 (-) // 100.0 //
Probeset : 1624100_at
Accessions : protein= NP_001138223; /// NP_608421;, nucleotide= NM_001144751; /// NM_134577;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from
FlyMine data for FBgn0031144.
Homophila reports that CG1529 is a close match (9e-11) to human gene MRX89;ZNF41 (NP_700359), a gene associated with Mental retardation, X-linked-89 (3).
VDRC has 3 RNAi stocks for FBgn0031144 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain29 ± 24 of 4 0.70Down
Head31 ± 34 of 4 0.80None
Eye8 ± 03 of 4 0.20Down
Thoracicoabdominal ganglion28 ± 24 of 4 0.70Down
Salivary gland49 ± 44 of 4 1.19None
Crop46 ± 14 of 4 1.10None
Midgut40 ± 44 of 4 1.00None
Tubule44 ± 54 of 4 1.10None
Hindgut34 ± 34 of 4 0.80None
Heart21 ± 24 of 4 0.53Down
Fat body49 ± 64 of 4 1.20None
Ovary103 ± 54 of 4 2.50Up
Testis9 ± 04 of 4 0.20Down
Male accessory glands50 ± 54 of 4 1.20None
Virgin spermatheca54 ± 34 of 4 1.33Up
Mated spermatheca57 ± 44 of 4 1.41Up
Adult carcass29 ± 24 of 4 0.70Down
Larval CNS47 ± 64 of 4 1.16None
Larval Salivary gland47 ± 14 of 4 1.15None
Larval midgut37 ± 24 of 4 0.90None
Larval tubule49 ± 44 of 4 1.20None
Larval hindgut46 ± 34 of 4 1.12None
Larval fat body35 ± 24 of 4 0.90None
Larval trachea24 ± 14 of 4 0.61Down
Larval carcass40 ± 14 of 4 0.99None
S2 cells (growing)101 ± 24 of 4 2.46Up
Whole fly41 ± 34 of 4

Looking for FBgn0031144. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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